miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 5' -66.2 NC_007605.1 + 12851 0.67 0.434313
Target:  5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3'
miRNA:   3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 13749 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33633 5' -66.2 NC_007605.1 + 14583 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33633 5' -66.2 NC_007605.1 + 15250 0.68 0.355984
Target:  5'- aCGCaCCCCgGGCCagGCcaccuuagacCCGGCCAAGCc -3'
miRNA:   3'- -GCGcGGGGgCCGG--CGc---------GGUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 15483 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 15786 0.69 0.348718
Target:  5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCc -3'
miRNA:   3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 15920 0.67 0.434313
Target:  5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3'
miRNA:   3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 16818 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33633 5' -66.2 NC_007605.1 + 17652 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33633 5' -66.2 NC_007605.1 + 18319 0.68 0.355984
Target:  5'- aCGCaCCCCgGGCCagGCcaccuuagacCCGGCCAAGCc -3'
miRNA:   3'- -GCGcGGGGgCCGG--CGc---------GGUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 18552 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 18855 0.69 0.348718
Target:  5'- --gGCCCCCcagacccgGGUCuCgGCCAGCCGAGCc -3'
miRNA:   3'- gcgCGGGGG--------CCGGcG-CGGUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 18988 0.67 0.434313
Target:  5'- --aGCCCCUcgGGCC-CGCCu-CCAGGCg -3'
miRNA:   3'- gcgCGGGGG--CCGGcGCGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 19887 0.7 0.288137
Target:  5'- uGCcCCCCUGGCgGC-CCAGCCcgacccccGGGCg -3'
miRNA:   3'- gCGcGGGGGCCGgCGcGGUCGG--------UUCG- -5'
33633 5' -66.2 NC_007605.1 + 20240 0.68 0.393889
Target:  5'- aCGaGgCCCUGGCCGUGgCCAGguaCGGGCu -3'
miRNA:   3'- -GCgCgGGGGCCGGCGC-GGUCg--GUUCG- -5'
33633 5' -66.2 NC_007605.1 + 20491 0.72 0.219145
Target:  5'- uGCGCCCCCcgugacggagcuggGGCaCGgGCC-GCCGAGg -3'
miRNA:   3'- gCGCGGGGG--------------CCG-GCgCGGuCGGUUCg -5'
33633 5' -66.2 NC_007605.1 + 20721 0.66 0.494707
Target:  5'- gGC-CCCCCGGUauCGgGCCAGaggUAAGUg -3'
miRNA:   3'- gCGcGGGGGCCG--GCgCGGUCg--GUUCG- -5'
33633 5' -66.2 NC_007605.1 + 21338 0.67 0.417852
Target:  5'- uGCGCUCUucUGGCCG-GCCgAGCgAAGUg -3'
miRNA:   3'- gCGCGGGG--GCCGGCgCGG-UCGgUUCG- -5'
33633 5' -66.2 NC_007605.1 + 21388 0.68 0.355984
Target:  5'- aCGCaCCCCgGGCCagGCcaccuuagacCCGGCCAAGCc -3'
miRNA:   3'- -GCGcGGGGgCCGG--CGc---------GGUCGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 21621 0.77 0.09119
Target:  5'- gGCGCCCggaguggggccggUCGGCUGgGCUGGCCGAGCc -3'
miRNA:   3'- gCGCGGG-------------GGCCGGCgCGGUCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.