miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33633 5' -66.2 NC_007605.1 + 48021 0.77 0.098405
Target:  5'- aCGCGgCCCCGGCCcCGCgAGaCAGGCg -3'
miRNA:   3'- -GCGCgGGGGCCGGcGCGgUCgGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 29877 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 30080 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 48855 0.66 0.512666
Target:  5'- aCGCuGacaCCCUGGCCGCGCC--CCAGu- -3'
miRNA:   3'- -GCG-Cg--GGGGCCGGCGCGGucGGUUcg -5'
33633 5' -66.2 NC_007605.1 + 28552 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 28654 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 28858 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 28959 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 29265 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 29775 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 29469 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 29163 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 113571 0.74 0.152024
Target:  5'- cCGCGgCCCCGGCCuccGCGgccCCGGCCuccAGCc -3'
miRNA:   3'- -GCGCgGGGGCCGG---CGC---GGUCGGu--UCG- -5'
33633 5' -66.2 NC_007605.1 + 29571 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 113526 0.74 0.163216
Target:  5'- cCGCGgCCCCGGCCuccGCGgccCCGGCCuccGCg -3'
miRNA:   3'- -GCGCgGGGGCCGG---CGC---GGUCGGuu-CG- -5'
33633 5' -66.2 NC_007605.1 + 29061 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 29673 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 29978 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5'
33633 5' -66.2 NC_007605.1 + 113482 0.73 0.175143
Target:  5'- uGCGgCCCCGGCCucuGCGgccCCGGCCucuGCg -3'
miRNA:   3'- gCGCgGGGGCCGG---CGC---GGUCGGuu-CG- -5'
33633 5' -66.2 NC_007605.1 + 28756 0.73 0.19225
Target:  5'- uGgGCCaCCCGGCCGC-CCc-CCGAGCu -3'
miRNA:   3'- gCgCGG-GGGCCGGCGcGGucGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.