miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33634 3' -54.9 NC_007605.1 + 25200 0.66 0.949169
Target:  5'- uGGcGGCCagaugucagcagcauGCCAgGGCGUGGCaCAGGGg -3'
miRNA:   3'- -CCaCUGGgu-------------CGGU-UCGCACUG-GUUCC- -5'
33634 3' -54.9 NC_007605.1 + 40284 0.74 0.600122
Target:  5'- gGGgagGACCgCGGCCGAGCc--ACCAGGGg -3'
miRNA:   3'- -CCa--CUGG-GUCGGUUCGcacUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 44175 0.73 0.660985
Target:  5'- --aGACCCcagAGUCAGGCuGUGGCCgAAGGg -3'
miRNA:   3'- ccaCUGGG---UCGGUUCG-CACUGG-UUCC- -5'
33634 3' -54.9 NC_007605.1 + 45458 0.66 0.950412
Target:  5'- -uUGGCCgGGCCGGGCcc--CCGGGGg -3'
miRNA:   3'- ccACUGGgUCGGUUCGcacuGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 48004 0.67 0.921564
Target:  5'- --gGGCCgUGGCCAGGgGUuACCGAGGc -3'
miRNA:   3'- ccaCUGG-GUCGGUUCgCAcUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 49706 0.67 0.93704
Target:  5'- --aGAUCCAcCCAGGgGUGGCCAugaccguggucAGGa -3'
miRNA:   3'- ccaCUGGGUcGGUUCgCACUGGU-----------UCC- -5'
33634 3' -54.9 NC_007605.1 + 51390 0.71 0.759638
Target:  5'- uGGUGACCCugcugcccagGGCCAGuauGCGccUGGuCCGAGGc -3'
miRNA:   3'- -CCACUGGG----------UCGGUU---CGC--ACU-GGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 53438 0.69 0.839215
Target:  5'- uGUGGCCCcuGGCCu-GgGUGACCAGa- -3'
miRNA:   3'- cCACUGGG--UCGGuuCgCACUGGUUcc -5'
33634 3' -54.9 NC_007605.1 + 54535 0.71 0.758692
Target:  5'- gGGUGG-CgGGCCAAGCGUccagucuGGCCAgAGGg -3'
miRNA:   3'- -CCACUgGgUCGGUUCGCA-------CUGGU-UCC- -5'
33634 3' -54.9 NC_007605.1 + 55018 0.68 0.88432
Target:  5'- --gGACCUGGCCGGG-GUggaaugucaGACCAAGGc -3'
miRNA:   3'- ccaCUGGGUCGGUUCgCA---------CUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 55670 0.7 0.822629
Target:  5'- aGGgccgcgGugUCGGCCAgcgguGGCGUGGCUucGGg -3'
miRNA:   3'- -CCa-----CugGGUCGGU-----UCGCACUGGuuCC- -5'
33634 3' -54.9 NC_007605.1 + 56323 0.67 0.915935
Target:  5'- -cUGGCCaCGGCCGuucgGGCGgccuccGCCAGGGa -3'
miRNA:   3'- ccACUGG-GUCGGU----UCGCac----UGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 56499 0.68 0.89765
Target:  5'- --aGACCCgucgGGCCAuuCGUGAguCCAGGGc -3'
miRNA:   3'- ccaCUGGG----UCGGUucGCACU--GGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 59301 0.71 0.740509
Target:  5'- --aGGCCCGGagcuCCGGccGUGUGGCCGAGGa -3'
miRNA:   3'- ccaCUGGGUC----GGUU--CGCACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 59735 0.66 0.945751
Target:  5'- uGGgucugGACCCgGGCCGugcgagcaaaggcGGCGaGAaCCGAGGg -3'
miRNA:   3'- -CCa----CUGGG-UCGGU-------------UCGCaCU-GGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 60275 0.81 0.281116
Target:  5'- gGGUGGCCguGUCGGcCGUGGCCAGGGc -3'
miRNA:   3'- -CCACUGGguCGGUUcGCACUGGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 61039 0.66 0.946186
Target:  5'- uGGagagGACCCGGCgaaGGGCG-GGCCAGa- -3'
miRNA:   3'- -CCa---CUGGGUCGg--UUCGCaCUGGUUcc -5'
33634 3' -54.9 NC_007605.1 + 61045 0.66 0.946186
Target:  5'- --gGACCCGGCgaaGGGCG-GGCCAGa- -3'
miRNA:   3'- ccaCUGGGUCGg--UUCGCaCUGGUUcc -5'
33634 3' -54.9 NC_007605.1 + 61627 0.69 0.862687
Target:  5'- cGGUGGCCUcgAGCCAccuccaccgcgAGCGgGAcacCCGGGGc -3'
miRNA:   3'- -CCACUGGG--UCGGU-----------UCGCaCU---GGUUCC- -5'
33634 3' -54.9 NC_007605.1 + 61713 0.67 0.915935
Target:  5'- -uUGAgCCCGGCCGAGagcagaacCGUGGCCAc-- -3'
miRNA:   3'- ccACU-GGGUCGGUUC--------GCACUGGUucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.