Results 21 - 40 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33634 | 3' | -54.9 | NC_007605.1 | + | 165976 | 0.66 | 0.950412 |
Target: 5'- gGGcGACCguGCCuga-GUGACCAuAGGu -3' miRNA: 3'- -CCaCUGGguCGGuucgCACUGGU-UCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 25200 | 0.66 | 0.949169 |
Target: 5'- uGGcGGCCagaugucagcagcauGCCAgGGCGUGGCaCAGGGg -3' miRNA: 3'- -CCaCUGGgu-------------CGGU-UCGCACUG-GUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 79857 | 0.66 | 0.946186 |
Target: 5'- aGUGACaCCgAGCagagCGAGCGggaagaGGCCAGGGc -3' miRNA: 3'- cCACUG-GG-UCG----GUUCGCa-----CUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 131345 | 0.66 | 0.946186 |
Target: 5'- uGGUGGCUCGGCCGcGGUccucccccGUGAaCGGGGc -3' miRNA: 3'- -CCACUGGGUCGGU-UCG--------CACUgGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 61045 | 0.66 | 0.946186 |
Target: 5'- --gGACCCGGCgaaGGGCG-GGCCAGa- -3' miRNA: 3'- ccaCUGGGUCGg--UUCGCaCUGGUUcc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 91167 | 0.66 | 0.946186 |
Target: 5'- uGGUaACCCauaGGCCAuccGGCG--GCCAGGGu -3' miRNA: 3'- -CCAcUGGG---UCGGU---UCGCacUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 61039 | 0.66 | 0.946186 |
Target: 5'- uGGagagGACCCGGCgaaGGGCG-GGCCAGa- -3' miRNA: 3'- -CCa---CUGGGUCGg--UUCGCaCUGGUUcc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 169315 | 0.66 | 0.946186 |
Target: 5'- gGGUGAggCGGCUAAGag-GGCUAAGGg -3' miRNA: 3'- -CCACUggGUCGGUUCgcaCUGGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 59735 | 0.66 | 0.945751 |
Target: 5'- uGGgucugGACCCgGGCCGugcgagcaaaggcGGCGaGAaCCGAGGg -3' miRNA: 3'- -CCa----CUGGG-UCGGU-------------UCGCaCU-GGUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 141799 | 0.67 | 0.941729 |
Target: 5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3' miRNA: 3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 138730 | 0.67 | 0.941729 |
Target: 5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3' miRNA: 3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 122198 | 0.67 | 0.941729 |
Target: 5'- cGGaUGACCC-GCCAAG-GUGugCAu-- -3' miRNA: 3'- -CC-ACUGGGuCGGUUCgCACugGUucc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 73183 | 0.67 | 0.941729 |
Target: 5'- ---cGCCCAGCCAAugucuGCGUGcgaGCCGGGc -3' miRNA: 3'- ccacUGGGUCGGUU-----CGCAC---UGGUUCc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 157144 | 0.67 | 0.941729 |
Target: 5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3' miRNA: 3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 144868 | 0.67 | 0.941729 |
Target: 5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3' miRNA: 3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 154075 | 0.67 | 0.941729 |
Target: 5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3' miRNA: 3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 151006 | 0.67 | 0.941729 |
Target: 5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3' miRNA: 3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 1388 | 0.67 | 0.941729 |
Target: 5'- cGGUGGCCUgcucaccaugguAGCCGGcgcuGUGUGGCUGAcGGu -3' miRNA: 3'- -CCACUGGG------------UCGGUU----CGCACUGGUU-CC- -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 73899 | 0.67 | 0.941729 |
Target: 5'- cGUGACggCGGCCAGGCucUGACCAGa- -3' miRNA: 3'- cCACUGg-GUCGGUUCGc-ACUGGUUcc -5' |
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33634 | 3' | -54.9 | NC_007605.1 | + | 147937 | 0.67 | 0.941729 |
Target: 5'- aGGUGGCCCcgGGCgcaGGGCaaGACgAGGGa -3' miRNA: 3'- -CCACUGGG--UCGg--UUCGcaCUGgUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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