miRNA display CGI


Results 21 - 40 of 284 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33634 5' -54.4 NC_007605.1 + 39655 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 85455 0.66 0.950293
Target:  5'- --gGCuGGCAGCCUUcACcAGGGUCCg -3'
miRNA:   3'- cugUGuCCGUUGGGAcUGuUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 39530 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 108999 0.66 0.950293
Target:  5'- uGGCAgcUAGGCugucuGCCaccaggucaUGACcGGGGCCCa -3'
miRNA:   3'- -CUGU--GUCCGu----UGGg--------ACUGuUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 85238 0.66 0.958212
Target:  5'- ---uCAGGUGccGCCCguuccccGGCAGAGGCCUc -3'
miRNA:   3'- cuguGUCCGU--UGGGa------CUGUUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 54242 0.66 0.941431
Target:  5'- aGGCcCAGGacgauGACCCUGuu-AGGGUCCg -3'
miRNA:   3'- -CUGuGUCCg----UUGGGACuguUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 57543 0.66 0.941431
Target:  5'- -uUAgGGGUAACCCUGuagucaccugcACAGAucugaccacGGCCCa -3'
miRNA:   3'- cuGUgUCCGUUGGGAC-----------UGUUU---------CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 38781 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 38531 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 38656 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 39280 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 72953 0.66 0.958212
Target:  5'- cGGCACAGGuCAuagauuUCCUccagcGACcaGGGGGCCCc -3'
miRNA:   3'- -CUGUGUCC-GUu-----GGGA-----CUG--UUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 113250 0.66 0.941431
Target:  5'- aGGCcaACGGcaGCGGCUUUGACcugguGGGGCCCg -3'
miRNA:   3'- -CUG--UGUC--CGUUGGGACUGu----UUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 39405 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 39155 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 39030 0.66 0.958212
Target:  5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3'
miRNA:   3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 59582 0.66 0.950293
Target:  5'- gGugACAGGU--CCC-GGCu--GGCCCg -3'
miRNA:   3'- -CugUGUCCGuuGGGaCUGuuuCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 122226 0.66 0.959686
Target:  5'- aGACACuGGGUgacGGCCCgGguccucucggagaagGCAAAGGCCa -3'
miRNA:   3'- -CUGUG-UCCG---UUGGGaC---------------UGUUUCCGGg -5'
33634 5' -54.4 NC_007605.1 + 151068 0.66 0.958212
Target:  5'- gGGCuCAGGCGGCCCcaGACAcgcaauuuGCCCc -3'
miRNA:   3'- -CUGuGUCCGUUGGGa-CUGUuuc-----CGGG- -5'
33634 5' -54.4 NC_007605.1 + 160492 0.66 0.950293
Target:  5'- -cCAgGGGCGAgCagcgcGGCAGAGGCCUc -3'
miRNA:   3'- cuGUgUCCGUUgGga---CUGUUUCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.