miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33634 5' -54.4 NC_007605.1 + 2026 0.66 0.950293
Target:  5'- aACACuuGGGCAcggagaguGCCCUGG---AGGCCUc -3'
miRNA:   3'- cUGUG--UCCGU--------UGGGACUguuUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 2326 0.72 0.725223
Target:  5'- uGGC-CGGGCcagaGACCgCUGACAcGAGGCCg -3'
miRNA:   3'- -CUGuGUCCG----UUGG-GACUGU-UUCCGGg -5'
33634 5' -54.4 NC_007605.1 + 2788 0.72 0.693952
Target:  5'- uGACACAcugcccugaggauGGaacaCGACCUUGAgAGGGGCCCa -3'
miRNA:   3'- -CUGUGU-------------CC----GUUGGGACUgUUUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 2986 0.72 0.715208
Target:  5'- gGGCACAGG-GGCCgUG-CAGAcGGCCCu -3'
miRNA:   3'- -CUGUGUCCgUUGGgACuGUUU-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 3657 0.66 0.950293
Target:  5'- uGGCACA-GCAGCCCgGGgu-AGGUCCc -3'
miRNA:   3'- -CUGUGUcCGUUGGGaCUguuUCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 3684 0.8 0.298551
Target:  5'- aGGCGCaccuggAGGUggUCCUGACAAuGGCCCa -3'
miRNA:   3'- -CUGUG------UCCGuuGGGACUGUUuCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 3748 0.72 0.680672
Target:  5'- -cCACAGG--ACCCUGACAAcacugaugacaauGGCCCa -3'
miRNA:   3'- cuGUGUCCguUGGGACUGUUu------------CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 3829 0.72 0.680672
Target:  5'- -cCACAGG--ACCCUGACAAcacugaugacaauGGCCCa -3'
miRNA:   3'- cuGUGUCCguUGGGACUGUUu------------CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 3995 0.67 0.926327
Target:  5'- cGCGcCGGGCAgacaacucgGCCgUGAUGGAGGCUa -3'
miRNA:   3'- cUGU-GUCCGU---------UGGgACUGUUUCCGGg -5'
33634 5' -54.4 NC_007605.1 + 5005 0.67 0.926327
Target:  5'- gGGC-CAGGgAcucuGCCCUGGC--AGGCCg -3'
miRNA:   3'- -CUGuGUCCgU----UGGGACUGuuUCCGGg -5'
33634 5' -54.4 NC_007605.1 + 8817 0.72 0.705121
Target:  5'- gGAgACGGGCAGCUacgUGGCGGGGGCggCCg -3'
miRNA:   3'- -CUgUGUCCGUUGGg--ACUGUUUCCG--GG- -5'
33634 5' -54.4 NC_007605.1 + 9041 0.69 0.86804
Target:  5'- gGACgACGGGCAGCggCCgGACGAcGaGCCCc -3'
miRNA:   3'- -CUG-UGUCCGUUG--GGaCUGUUuC-CGGG- -5'
33634 5' -54.4 NC_007605.1 + 9884 0.67 0.920805
Target:  5'- cGCGgAGGaguACUCUGACcu-GGCCCu -3'
miRNA:   3'- cUGUgUCCgu-UGGGACUGuuuCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 10114 0.69 0.871027
Target:  5'- cACGCGGGCGguggagucggcagcgGCCUacGCGGAGGCCa -3'
miRNA:   3'- cUGUGUCCGU---------------UGGGacUGUUUCCGGg -5'
33634 5' -54.4 NC_007605.1 + 11459 0.71 0.754739
Target:  5'- -cCAC-GGCAACCCUuccacGGCAGAGGggaCCCa -3'
miRNA:   3'- cuGUGuCCGUUGGGA-----CUGUUUCC---GGG- -5'
33634 5' -54.4 NC_007605.1 + 11607 0.75 0.531089
Target:  5'- aGGC-CGGGCGGCCCaGAgGAGGGCgCg -3'
miRNA:   3'- -CUGuGUCCGUUGGGaCUgUUUCCGgG- -5'
33634 5' -54.4 NC_007605.1 + 12252 0.67 0.93664
Target:  5'- cGCaACAGaGCGagACCCUGACcGAGaCCCu -3'
miRNA:   3'- cUG-UGUC-CGU--UGGGACUGuUUCcGGG- -5'
33634 5' -54.4 NC_007605.1 + 12376 0.74 0.591983
Target:  5'- aGAgACAGGCAggGCCCcccGGCAGcuGGCCCc -3'
miRNA:   3'- -CUgUGUCCGU--UGGGa--CUGUUu-CCGGG- -5'
33634 5' -54.4 NC_007605.1 + 12508 0.68 0.898919
Target:  5'- cGC-CGGGUGGCCCUGggguaagucugggagGCAGagggucggccuAGGCCCg -3'
miRNA:   3'- cUGuGUCCGUUGGGAC---------------UGUU-----------UCCGGG- -5'
33634 5' -54.4 NC_007605.1 + 12592 0.69 0.86804
Target:  5'- uGGCAgagucCGGGCGAUCCUcugaGACccuccGGGCCCg -3'
miRNA:   3'- -CUGU-----GUCCGUUGGGA----CUGuu---UCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.