Results 21 - 40 of 284 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33634 | 5' | -54.4 | NC_007605.1 | + | 152474 | 0.66 | 0.958212 |
Target: 5'- -uCugGGGCcGCCCgGGCugccGGGGUCCc -3' miRNA: 3'- cuGugUCCGuUGGGaCUGu---UUCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 146336 | 0.66 | 0.958212 |
Target: 5'- -uCugGGGCcGCCCgGGCugccGGGGUCCc -3' miRNA: 3'- cuGugUCCGuUGGGaCUGu---UUCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 152629 | 0.66 | 0.958212 |
Target: 5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3' miRNA: 3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 137129 | 0.66 | 0.958212 |
Target: 5'- -uCugGGGCcGCCCgGGCugccGGGGUCCc -3' miRNA: 3'- cuGugUCCGuUGGGaCUGu---UUCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 143422 | 0.66 | 0.958212 |
Target: 5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3' miRNA: 3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 158766 | 0.66 | 0.958212 |
Target: 5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3' miRNA: 3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 149560 | 0.66 | 0.958212 |
Target: 5'- aGAC-CAGGagGGCgCCUGGaggcGGGCCCg -3' miRNA: 3'- -CUGuGUCCg-UUG-GGACUguu-UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 149405 | 0.66 | 0.958212 |
Target: 5'- -uCugGGGCcGCCCgGGCugccGGGGUCCc -3' miRNA: 3'- cuGugUCCGuUGGGaCUGu---UUCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 140198 | 0.66 | 0.958212 |
Target: 5'- -uCugGGGCcGCCCgGGCugccGGGGUCCc -3' miRNA: 3'- cuGugUCCGuUGGGaCUGu---UUCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 126447 | 0.66 | 0.958212 |
Target: 5'- gGAgGCuGGCGACCauucGC-AGGGCCCc -3' miRNA: 3'- -CUgUGuCCGUUGGgac-UGuUUCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 38781 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 38281 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 38406 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 39280 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 39030 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 85238 | 0.66 | 0.958212 |
Target: 5'- ---uCAGGUGccGCCCguuccccGGCAGAGGCCUc -3' miRNA: 3'- cuguGUCCGU--UGGGa------CUGUUUCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 39155 | 0.66 | 0.958212 |
Target: 5'- uGGCGCuccggGGGCAGCCg-GGCGGccgccgguGGGUCCg -3' miRNA: 3'- -CUGUG-----UCCGUUGGgaCUGUU--------UCCGGG- -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 144253 | 0.66 | 0.957838 |
Target: 5'- uGCugAGGCcgggguccaggggGACCCgagGGCcuuAGAGGCCa -3' miRNA: 3'- cUGugUCCG-------------UUGGGa--CUG---UUUCCGGg -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 138115 | 0.66 | 0.957838 |
Target: 5'- uGCugAGGCcgggguccaggggGACCCgagGGCcuuAGAGGCCa -3' miRNA: 3'- cUGugUCCG-------------UUGGGa--CUG---UUUCCGGg -5' |
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33634 | 5' | -54.4 | NC_007605.1 | + | 141184 | 0.66 | 0.957838 |
Target: 5'- uGCugAGGCcgggguccaggggGACCCgagGGCcuuAGAGGCCa -3' miRNA: 3'- cUGugUCCG-------------UUGGGa--CUG---UUUCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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