miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33639 5' -45.8 NC_007610.1 + 44849 0.66 0.999849
Target:  5'- ---cUAGgaGACUacCGAGGA-CUAACCg -3'
miRNA:   3'- aauaAUCgaCUGA--GCUUCUcGAUUGG- -5'
33639 5' -45.8 NC_007610.1 + 130582 0.67 0.999672
Target:  5'- ----aAGaCUGACaaUGAGGAGCUAACa -3'
miRNA:   3'- aauaaUC-GACUGa-GCUUCUCGAUUGg -5'
33639 5' -45.8 NC_007610.1 + 127675 0.69 0.997734
Target:  5'- ----gAGCggaGACUUaGAGAGCUGACUu -3'
miRNA:   3'- aauaaUCGa--CUGAGcUUCUCGAUUGG- -5'
33639 5' -45.8 NC_007610.1 + 20418 0.7 0.995426
Target:  5'- ---gUAGCaGACgaguuaGAAGAGCUAACa -3'
miRNA:   3'- aauaAUCGaCUGag----CUUCUCGAUUGg -5'
33639 5' -45.8 NC_007610.1 + 127558 1.12 0.015359
Target:  5'- aUUAUUAGCUGACUCGAAGAGCUAACCu -3'
miRNA:   3'- -AAUAAUCGACUGAGCUUCUCGAUUGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.