Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33665 | 5' | -54.3 | NC_011450.1 | + | 2070 | 0.67 | 0.19516 |
Target: 5'- aAGCCCgaugUGUUggGC-CCAGCAACgUg -3' miRNA: 3'- gUCGGG----ACAGuuUGuGGUCGUUGgGg -5' |
|||||||
33665 | 5' | -54.3 | NC_011450.1 | + | 284 | 0.74 | 0.055678 |
Target: 5'- gAGCCC-GUgGAGCGUCGGaCAGCCCCa -3' miRNA: 3'- gUCGGGaCAgUUUGUGGUC-GUUGGGG- -5' |
|||||||
33665 | 5' | -54.3 | NC_011450.1 | + | 3512 | 1.12 | 0.000036 |
Target: 5'- gCAGCCCUGUCAAACACCAGCAACCCCa -3' miRNA: 3'- -GUCGGGACAGUUUGUGGUCGUUGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home