Results 1 - 2 of 2 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33688 | 5' | -56.5 | NC_011452.1 | + | 6623 | 1.09 | 0.000043 |
Target: 5'- uCCCCCUCACACUGAGGGGUUGGUAGUg -3' miRNA: 3'- -GGGGGAGUGUGACUCCCCAACCAUCA- -5' |
|||||||
33688 | 5' | -56.5 | NC_011452.1 | + | 6649 | 0.66 | 0.172892 |
Target: 5'- aCCCCUCAgugUGAGGGGgagGGUcGa -3' miRNA: 3'- gGGGGAGUgugACUCCCCaa-CCAuCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home