miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
339 3' -56.1 AC_000010.1 + 31104 0.66 0.556108
Target:  5'- gACCAUCGCCUCUCAUa-CGAGc--- -3'
miRNA:   3'- gUGGUGGUGGAGAGUGgaGCUCcuac -5'
339 3' -56.1 AC_000010.1 + 26107 0.66 0.523171
Target:  5'- aGCUACCAUCUC-CGCUccgggUCGGGGGg- -3'
miRNA:   3'- gUGGUGGUGGAGaGUGG-----AGCUCCUac -5'
339 3' -56.1 AC_000010.1 + 6327 0.67 0.491012
Target:  5'- aCACUggugGCCACCUC--GCCUCgGAGGGg- -3'
miRNA:   3'- -GUGG----UGGUGGAGagUGGAG-CUCCUac -5'
339 3' -56.1 AC_000010.1 + 15846 0.67 0.449631
Target:  5'- gGCCACCACCUggucgaUCACaucaUCGAcGGUGg -3'
miRNA:   3'- gUGGUGGUGGAg-----AGUGg---AGCUcCUAC- -5'
339 3' -56.1 AC_000010.1 + 26302 0.68 0.400739
Target:  5'- cCGCUACCugCUCUucCACCaCG-GGGUGa -3'
miRNA:   3'- -GUGGUGGugGAGA--GUGGaGCuCCUAC- -5'
339 3' -56.1 AC_000010.1 + 23854 0.68 0.400739
Target:  5'- uGCguCgACCUcCUCAuCCUCGAGGGUa -3'
miRNA:   3'- gUGguGgUGGA-GAGU-GGAGCUCCUAc -5'
339 3' -56.1 AC_000010.1 + 8242 0.69 0.364149
Target:  5'- gGCCugCGCgCUCUCGuCCUCGAGc--- -3'
miRNA:   3'- gUGGugGUG-GAGAGU-GGAGCUCcuac -5'
339 3' -56.1 AC_000010.1 + 23710 0.69 0.363264
Target:  5'- gCACCAUCACaC-CUCGCCUccagcgaCGAGGAg- -3'
miRNA:   3'- -GUGGUGGUG-GaGAGUGGA-------GCUCCUac -5'
339 3' -56.1 AC_000010.1 + 23562 0.7 0.321763
Target:  5'- uCACCuCCGCCUCUCcCCcgaaGAGGAa- -3'
miRNA:   3'- -GUGGuGGUGGAGAGuGGag--CUCCUac -5'
339 3' -56.1 AC_000010.1 + 30901 0.7 0.298154
Target:  5'- cCACuCGCCGCCUC-CACUgcugcCGAGGAa- -3'
miRNA:   3'- -GUG-GUGGUGGAGaGUGGa----GCUCCUac -5'
339 3' -56.1 AC_000010.1 + 8458 0.7 0.298154
Target:  5'- aCACCACCGCCUC-CGCCcaaaAGGAa- -3'
miRNA:   3'- -GUGGUGGUGGAGaGUGGagc-UCCUac -5'
339 3' -56.1 AC_000010.1 + 10341 0.74 0.184166
Target:  5'- cCACCACCGCCUCcgguaUCACCU---GGAUGu -3'
miRNA:   3'- -GUGGUGGUGGAG-----AGUGGAgcuCCUAC- -5'
339 3' -56.1 AC_000010.1 + 23780 0.93 0.007102
Target:  5'- cCACCACCACCUCUaC-CCUCGAGGAUGa -3'
miRNA:   3'- -GUGGUGGUGGAGA-GuGGAGCUCCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.