Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
339 | 3' | -56.1 | AC_000010.1 | + | 23780 | 0.93 | 0.007102 |
Target: 5'- cCACCACCACCUCUaC-CCUCGAGGAUGa -3' miRNA: 3'- -GUGGUGGUGGAGA-GuGGAGCUCCUAC- -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 10341 | 0.74 | 0.184166 |
Target: 5'- cCACCACCGCCUCcgguaUCACCU---GGAUGu -3' miRNA: 3'- -GUGGUGGUGGAG-----AGUGGAgcuCCUAC- -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 8458 | 0.7 | 0.298154 |
Target: 5'- aCACCACCGCCUC-CGCCcaaaAGGAa- -3' miRNA: 3'- -GUGGUGGUGGAGaGUGGagc-UCCUac -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 23562 | 0.7 | 0.321763 |
Target: 5'- uCACCuCCGCCUCUCcCCcgaaGAGGAa- -3' miRNA: 3'- -GUGGuGGUGGAGAGuGGag--CUCCUac -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 30901 | 0.7 | 0.298154 |
Target: 5'- cCACuCGCCGCCUC-CACUgcugcCGAGGAa- -3' miRNA: 3'- -GUG-GUGGUGGAGaGUGGa----GCUCCUac -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 23710 | 0.69 | 0.363264 |
Target: 5'- gCACCAUCACaC-CUCGCCUccagcgaCGAGGAg- -3' miRNA: 3'- -GUGGUGGUG-GaGAGUGGA-------GCUCCUac -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 8242 | 0.69 | 0.364149 |
Target: 5'- gGCCugCGCgCUCUCGuCCUCGAGc--- -3' miRNA: 3'- gUGGugGUG-GAGAGU-GGAGCUCcuac -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 26302 | 0.68 | 0.400739 |
Target: 5'- cCGCUACCugCUCUucCACCaCG-GGGUGa -3' miRNA: 3'- -GUGGUGGugGAGA--GUGGaGCuCCUAC- -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 23854 | 0.68 | 0.400739 |
Target: 5'- uGCguCgACCUcCUCAuCCUCGAGGGUa -3' miRNA: 3'- gUGguGgUGGA-GAGU-GGAGCUCCUAc -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 15846 | 0.67 | 0.449631 |
Target: 5'- gGCCACCACCUggucgaUCACaucaUCGAcGGUGg -3' miRNA: 3'- gUGGUGGUGGAg-----AGUGg---AGCUcCUAC- -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 6327 | 0.67 | 0.491012 |
Target: 5'- aCACUggugGCCACCUC--GCCUCgGAGGGg- -3' miRNA: 3'- -GUGG----UGGUGGAGagUGGAG-CUCCUac -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 26107 | 0.66 | 0.523171 |
Target: 5'- aGCUACCAUCUC-CGCUccgggUCGGGGGg- -3' miRNA: 3'- gUGGUGGUGGAGaGUGG-----AGCUCCUac -5' |
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339 | 3' | -56.1 | AC_000010.1 | + | 31104 | 0.66 | 0.556108 |
Target: 5'- gACCAUCGCCUCUCAUa-CGAGc--- -3' miRNA: 3'- gUGGUGGUGGAGAGUGgaGCUCcuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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