Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
339 | 5' | -58.1 | AC_000010.1 | + | 26793 | 0.66 | 0.46146 |
Target: 5'- aCGUAauUCCCGccuuuuucGAGAUagcGCGGGCGCGGGc -3' miRNA: 3'- -GCGU--GGGGUc-------CUCUA---UGUCCGCGUCC- -5' |
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339 | 5' | -58.1 | AC_000010.1 | + | 5935 | 0.66 | 0.451434 |
Target: 5'- uCGCugUCCAGGAGcgccaGCuguuGGgGUAGGu -3' miRNA: 3'- -GCGugGGGUCCUCua---UGu---CCgCGUCC- -5' |
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339 | 5' | -58.1 | AC_000010.1 | + | 16984 | 0.66 | 0.451434 |
Target: 5'- uGUACCUCAauGGAGGUGguugUGGGCuuuGCAGGu -3' miRNA: 3'- gCGUGGGGU--CCUCUAU----GUCCG---CGUCC- -5' |
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339 | 5' | -58.1 | AC_000010.1 | + | 18322 | 0.66 | 0.431746 |
Target: 5'- cCGC-CCCCAGGAcgcGGUcugGCuacGGCGaCGGGc -3' miRNA: 3'- -GCGuGGGGUCCU---CUA---UGu--CCGC-GUCC- -5' |
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339 | 5' | -58.1 | AC_000010.1 | + | 10070 | 0.68 | 0.348937 |
Target: 5'- gGUGCCCCGGGcgcacaaucucGGuGUACuugaggcgcgaguAGGCGCGGGu -3' miRNA: 3'- gCGUGGGGUCC-----------UC-UAUG-------------UCCGCGUCC- -5' |
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339 | 5' | -58.1 | AC_000010.1 | + | 15894 | 0.69 | 0.309274 |
Target: 5'- uGCAUCCaCAGuAGAUGUAGGUGCAGu -3' miRNA: 3'- gCGUGGG-GUCcUCUAUGUCCGCGUCc -5' |
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339 | 5' | -58.1 | AC_000010.1 | + | 10268 | 0.69 | 0.271743 |
Target: 5'- uGUACCuggacauCCAGGuGAUACcggAGGCGguGGu -3' miRNA: 3'- gCGUGG-------GGUCCuCUAUG---UCCGCguCC- -5' |
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339 | 5' | -58.1 | AC_000010.1 | + | 17375 | 0.72 | 0.177987 |
Target: 5'- uCGCGCCgUagaagaGGGAuGUugGGGCGCGGGa -3' miRNA: 3'- -GCGUGGgG------UCCUcUAugUCCGCGUCC- -5' |
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339 | 5' | -58.1 | AC_000010.1 | + | 23816 | 1.11 | 0.00021 |
Target: 5'- aCGCACCCCAGGAGAUACAGGCGCAGGa -3' miRNA: 3'- -GCGUGGGGUCCUCUAUGUCCGCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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