Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 341 | 3' | -52.6 | AC_000010.1 | + | 26105 | 0.66 | 0.74567 |
|
Target: 5'- gAGGAcaACUGUUUGGc---GGCGGuuGCu -3' miRNA: 3'- -UCCU--UGACGAACUauacCUGCCggCG- -5' |
|||||||
| 341 | 3' | -52.6 | AC_000010.1 | + | 7936 | 0.66 | 0.712165 |
|
Target: 5'- -cGAGCauucaUGCUUGugcuUGUacaGACGGCCGCa -3' miRNA: 3'- ucCUUG-----ACGAACu---AUAc--CUGCCGGCG- -5' |
|||||||
| 341 | 3' | -52.6 | AC_000010.1 | + | 23813 | 0.7 | 0.495133 |
|
Target: 5'- cGGGACUGggUGGUG-GGGCGGUuaaGCu -3' miRNA: 3'- uCCUUGACgaACUAUaCCUGCCGg--CG- -5' |
|||||||
| 341 | 3' | -52.6 | AC_000010.1 | + | 12134 | 0.71 | 0.452479 |
|
Target: 5'- cAGGAggugGCUGUUgcUGcaucuaacaaaaAUAUGGAUGGUCGCg -3' miRNA: 3'- -UCCU----UGACGA--AC------------UAUACCUGCCGGCG- -5' |
|||||||
| 341 | 3' | -52.6 | AC_000010.1 | + | 23589 | 0.72 | 0.402124 |
|
Target: 5'- gGGGGugUGCUcccgGUGG-CGGUCGCu -3' miRNA: 3'- -UCCUugACGAacuaUACCuGCCGGCG- -5' |
|||||||
| 341 | 3' | -52.6 | AC_000010.1 | + | 30925 | 1.03 | 0.002716 |
|
Target: 5'- gAGGAACUGCUUGA-AUGGACGGCCGCa -3' miRNA: 3'- -UCCUUGACGAACUaUACCUGCCGGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home