miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
342 3' -52.7 AC_000011.1 + 1746 1.1 0.000915
Target:  5'- aGCUAGGUCGCCACCGAAGCAGAAUCUc -3'
miRNA:   3'- -CGAUCCAGCGGUGGCUUCGUCUUAGA- -5'
342 3' -52.7 AC_000011.1 + 3100 0.67 0.653409
Target:  5'- --gGGGUC-CCGCCGAGGCAuguUCa -3'
miRNA:   3'- cgaUCCAGcGGUGGCUUCGUcuuAGa -5'
342 3' -52.7 AC_000011.1 + 3890 0.69 0.54981
Target:  5'- uGCUGGGUCaGCuCGCCcAGGCGcuGggUCa -3'
miRNA:   3'- -CGAUCCAG-CG-GUGGcUUCGU--CuuAGa -5'
342 3' -52.7 AC_000011.1 + 5236 0.68 0.595551
Target:  5'- gGCUGGG-CGCUugCGAGGguGcgcuUCa -3'
miRNA:   3'- -CGAUCCaGCGGugGCUUCguCuu--AGa -5'
342 3' -52.7 AC_000011.1 + 10952 0.69 0.527334
Target:  5'- gGCUGGaaGUUGCUGCUGggGCGGGggCa -3'
miRNA:   3'- -CGAUC--CAGCGGUGGCuuCGUCUuaGa -5'
342 3' -52.7 AC_000011.1 + 10990 0.68 0.582891
Target:  5'- gGCUGGcgcgccugggggcGUCGUCGCCGGAGCGGc---- -3'
miRNA:   3'- -CGAUC-------------CAGCGGUGGCUUCGUCuuaga -5'
342 3' -52.7 AC_000011.1 + 12996 0.67 0.653409
Target:  5'- uGCUGaG-CGCgUACUGggGCGGGAUCUu -3'
miRNA:   3'- -CGAUcCaGCG-GUGGCuuCGUCUUAGA- -5'
342 3' -52.7 AC_000011.1 + 18694 0.66 0.710709
Target:  5'- -gUAGG-CGgUGCCGGAGUAGggUUUg -3'
miRNA:   3'- cgAUCCaGCgGUGGCUUCGUCuuAGA- -5'
342 3' -52.7 AC_000011.1 + 20078 0.74 0.281385
Target:  5'- cGC-AGGUCGUUGCCGAGggagcucuGCAGGAUCa -3'
miRNA:   3'- -CGaUCCAGCGGUGGCUU--------CGUCUUAGa -5'
342 3' -52.7 AC_000011.1 + 22012 0.67 0.676482
Target:  5'- uGCUGGG-CGCCcugcaACUGAcGCGGAAgCUg -3'
miRNA:   3'- -CGAUCCaGCGG-----UGGCUuCGUCUUaGA- -5'
342 3' -52.7 AC_000011.1 + 26842 0.69 0.572573
Target:  5'- cGCUGGGUCuGCgACCuGA-CGGAGUCUu -3'
miRNA:   3'- -CGAUCCAG-CGgUGGcUUcGUCUUAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.