miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
344 5' -57.8 AC_000011.1 + 15599 0.66 0.495374
Target:  5'- uCCCUggggcgCCCUCAAGGGccgcgugcGGUCGCgcaCCa -3'
miRNA:   3'- -GGGGa-----GGGAGUUUCC--------UCGGCGaa-GGc -5'
344 5' -57.8 AC_000011.1 + 2135 0.66 0.441768
Target:  5'- aCCCUCCggCGGAGGAGgaggaguagcugacCUGUUUCCu -3'
miRNA:   3'- gGGGAGGgaGUUUCCUC--------------GGCGAAGGc -5'
344 5' -57.8 AC_000011.1 + 17970 0.67 0.397092
Target:  5'- aCCgCCUCCUcgUAcGGGGGCgGCUcgUCCGu -3'
miRNA:   3'- -GG-GGAGGGa-GUuUCCUCGgCGA--AGGC- -5'
344 5' -57.8 AC_000011.1 + 23282 0.67 0.387968
Target:  5'- gCCCCUUCCgCGuucGGGGGUgCGCUcCCGg -3'
miRNA:   3'- -GGGGAGGGaGUu--UCCUCG-GCGAaGGC- -5'
344 5' -57.8 AC_000011.1 + 17867 0.68 0.370138
Target:  5'- aCCCCgcCCCgaugCGGAGGAGaCGCUgCUGa -3'
miRNA:   3'- -GGGGa-GGGa---GUUUCCUCgGCGAaGGC- -5'
344 5' -57.8 AC_000011.1 + 17924 0.68 0.370138
Target:  5'- uCUCCUCCgcaUCGGGgcGGGGUCGCUUCUc -3'
miRNA:   3'- -GGGGAGGg--AGUUU--CCUCGGCGAAGGc -5'
344 5' -57.8 AC_000011.1 + 7161 0.68 0.361435
Target:  5'- gCCCUCCCcguggaGAAGG-GCUGCUgcgCCu -3'
miRNA:   3'- gGGGAGGGag----UUUCCuCGGCGAa--GGc -5'
344 5' -57.8 AC_000011.1 + 8549 0.69 0.328068
Target:  5'- gCCCCUgCCUCcGGGccccGAGCCGCcccugCCGc -3'
miRNA:   3'- -GGGGAgGGAGuUUC----CUCGGCGaa---GGC- -5'
344 5' -57.8 AC_000011.1 + 8767 0.69 0.297035
Target:  5'- uCUCCUCCuCUUGAAGGucuCCGCggCCGg -3'
miRNA:   3'- -GGGGAGG-GAGUUUCCuc-GGCGaaGGC- -5'
344 5' -57.8 AC_000011.1 + 20237 0.71 0.223538
Target:  5'- uCCCCUCgCgCAAcuGGGCCGcCUUCCGc -3'
miRNA:   3'- -GGGGAGgGaGUUucCUCGGC-GAAGGC- -5'
344 5' -57.8 AC_000011.1 + 3552 1.1 0.000305
Target:  5'- aCCCCUCCCUCAAAGGAGCCGCUUCCGc -3'
miRNA:   3'- -GGGGAGGGAGUUUCCUCGGCGAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.