miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
345 3' -63.6 AC_000011.1 + 3353 0.66 0.254313
Target:  5'- cCCugCaCCGGGACGGaGUUCGguUCCAg -3'
miRNA:   3'- -GGugGgGGCCCUGCC-CGAGUacGGGU- -5'
345 3' -63.6 AC_000011.1 + 9445 0.66 0.248027
Target:  5'- gCgGCCCCgCGaGGACGGGCgc--GCCg- -3'
miRNA:   3'- -GgUGGGG-GC-CCUGCCCGaguaCGGgu -5'
345 3' -63.6 AC_000011.1 + 15645 0.66 0.24187
Target:  5'- gCGCCCCaGGGAgCGcGGaa-GUGCCCGc -3'
miRNA:   3'- gGUGGGGgCCCU-GC-CCgagUACGGGU- -5'
345 3' -63.6 AC_000011.1 + 25240 0.66 0.22359
Target:  5'- cUCACCCCgGGGcuguggaccuCGGccuacuugcgcaaGUUCGUGCCCGa -3'
miRNA:   3'- -GGUGGGGgCCCu---------GCC-------------CGAGUACGGGU- -5'
345 3' -63.6 AC_000011.1 + 8895 0.67 0.192042
Target:  5'- aCGCCCUCGGGAUcgccGGCgcgCAUGaCCAc -3'
miRNA:   3'- gGUGGGGGCCCUGc---CCGa--GUACgGGU- -5'
345 3' -63.6 AC_000011.1 + 4682 0.69 0.139747
Target:  5'- aCGCCCCCGGGAUcgaGGGUaCcuuUGUCCc -3'
miRNA:   3'- gGUGGGGGCCCUG---CCCGaGu--ACGGGu -5'
345 3' -63.6 AC_000011.1 + 24495 0.69 0.136035
Target:  5'- aCUACCUCUucaGGcACGGGUUCGUGCgCCAg -3'
miRNA:   3'- -GGUGGGGG---CCcUGCCCGAGUACG-GGU- -5'
345 3' -63.6 AC_000011.1 + 6358 0.7 0.132056
Target:  5'- aUCACCCUgcauaauCGGGGCuGGCaggucagaaUCGUGCCCGa -3'
miRNA:   3'- -GGUGGGG-------GCCCUGcCCG---------AGUACGGGU- -5'
345 3' -63.6 AC_000011.1 + 18137 0.7 0.128881
Target:  5'- -uGCCCCCGGGucgcgcGCGGGC-CAcgGCCa- -3'
miRNA:   3'- ggUGGGGGCCC------UGCCCGaGUa-CGGgu -5'
345 3' -63.6 AC_000011.1 + 23340 0.7 0.125436
Target:  5'- gCACCCCCGaacgcGGAagGGGCUC-UGCCa- -3'
miRNA:   3'- gGUGGGGGC-----CCUg-CCCGAGuACGGgu -5'
345 3' -63.6 AC_000011.1 + 19881 0.73 0.07431
Target:  5'- -uGCUCCUGGGcaACGGGCgcuaCGUGCCCu -3'
miRNA:   3'- ggUGGGGGCCC--UGCCCGa---GUACGGGu -5'
345 3' -63.6 AC_000011.1 + 21613 0.74 0.059214
Target:  5'- gCACCCCCGucagcaaguucauGGugGGGUUCuUGUCCAu -3'
miRNA:   3'- gGUGGGGGC-------------CCugCCCGAGuACGGGU- -5'
345 3' -63.6 AC_000011.1 + 13187 0.76 0.043387
Target:  5'- cCCGCCgCCGGGguucuacACGGGCgaguacgaCAUGCCCGa -3'
miRNA:   3'- -GGUGGgGGCCC-------UGCCCGa-------GUACGGGU- -5'
345 3' -63.6 AC_000011.1 + 4143 1.09 0.000106
Target:  5'- uCCACCCCCGGGACGGGCUCAUGCCCAu -3'
miRNA:   3'- -GGUGGGGGCCCUGCCCGAGUACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.