miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3451 5' -42.1 NC_001604.1 + 19468 0.66 0.999875
Target:  5'- ---aAGCAUGAAGGCGAgacaauGCGuguauacuuuaaGGAGGUa -3'
miRNA:   3'- caagUUGUAUUUCCGUU------UGC------------UUUCCG- -5'
3451 5' -42.1 NC_001604.1 + 39181 0.66 0.999875
Target:  5'- -cUCAcuAUAgggAGAGGagGGACGAAAGGUu -3'
miRNA:   3'- caAGU--UGUa--UUUCCg-UUUGCUUUCCG- -5'
3451 5' -42.1 NC_001604.1 + 19369 0.66 0.999875
Target:  5'- -aUUAAUccuGAGGCAGACucuAAGGGCu -3'
miRNA:   3'- caAGUUGuauUUCCGUUUGc--UUUCCG- -5'
3451 5' -42.1 NC_001604.1 + 22732 0.66 0.999875
Target:  5'- ---aAGCGUGAAGGCuuuGCGGAccGUa -3'
miRNA:   3'- caagUUGUAUUUCCGuu-UGCUUucCG- -5'
3451 5' -42.1 NC_001604.1 + 34327 0.66 0.999775
Target:  5'- --cUAACGUAGGGGCuaccuuAAUGAAugcugcuGGCg -3'
miRNA:   3'- caaGUUGUAUUUCCGu-----UUGCUUu------CCG- -5'
3451 5' -42.1 NC_001604.1 + 17979 0.66 0.999702
Target:  5'- ---gAGCAccGAAGGCAGACGGAuuGGa -3'
miRNA:   3'- caagUUGUa-UUUCCGUUUGCUUu-CCg -5'
3451 5' -42.1 NC_001604.1 + 20616 0.66 0.999609
Target:  5'- aGUUCAugAUGAuacGCucuaccauCGAGAGGCc -3'
miRNA:   3'- -CAAGUugUAUUuc-CGuuu-----GCUUUCCG- -5'
3451 5' -42.1 NC_001604.1 + 26645 0.67 0.999492
Target:  5'- cUUCAugucCAUAAAGGC--ACGAuAGGg -3'
miRNA:   3'- cAAGUu---GUAUUUCCGuuUGCUuUCCg -5'
3451 5' -42.1 NC_001604.1 + 13385 0.67 0.999492
Target:  5'- --aCAACGUGGAaGcCAAGCGAcugaacgauGAGGCu -3'
miRNA:   3'- caaGUUGUAUUUcC-GUUUGCU---------UUCCG- -5'
3451 5' -42.1 NC_001604.1 + 7956 0.67 0.999345
Target:  5'- cGUUCAAuCGUAuguGCGAGCGAGcgccGGCu -3'
miRNA:   3'- -CAAGUU-GUAUuucCGUUUGCUUu---CCG- -5'
3451 5' -42.1 NC_001604.1 + 1902 0.67 0.99894
Target:  5'- aGggCGGCGU---GGCAuaGACGAAAGGa -3'
miRNA:   3'- -CaaGUUGUAuuuCCGU--UUGCUUUCCg -5'
3451 5' -42.1 NC_001604.1 + 21301 0.69 0.996255
Target:  5'- gGUUCAGCGUAcAGGUGAACGuguGAccGCc -3'
miRNA:   3'- -CAAGUUGUAUuUCCGUUUGC---UUucCG- -5'
3451 5' -42.1 NC_001604.1 + 26140 0.69 0.995403
Target:  5'- aGUUUGACGUAcAGGacCGAGCGAGaccuuuugggauuGGGCg -3'
miRNA:   3'- -CAAGUUGUAUuUCC--GUUUGCUU-------------UCCG- -5'
3451 5' -42.1 NC_001604.1 + 12520 0.7 0.990747
Target:  5'- -gUCAACAagcucuacaauGGGGCAcAGCGAuGGGCa -3'
miRNA:   3'- caAGUUGUau---------UUCCGU-UUGCUuUCCG- -5'
3451 5' -42.1 NC_001604.1 + 17518 0.71 0.987786
Target:  5'- aGUU--ACGUGAAGGCugcGACGAcaAGGGUa -3'
miRNA:   3'- -CAAguUGUAUUUCCGu--UUGCU--UUCCG- -5'
3451 5' -42.1 NC_001604.1 + 1082 0.73 0.951784
Target:  5'- cUUUAGCGUAAuGGCAAGUG-AGGGCa -3'
miRNA:   3'- cAAGUUGUAUUuCCGUUUGCuUUCCG- -5'
3451 5' -42.1 NC_001604.1 + 35587 0.79 0.75055
Target:  5'- uGUUCAACGUAGAGaGUGgacaacAGCGAuAGGCg -3'
miRNA:   3'- -CAAGUUGUAUUUC-CGU------UUGCUuUCCG- -5'
3451 5' -42.1 NC_001604.1 + 11150 0.8 0.702442
Target:  5'- --cCAACGcuuAAGGuCGAACGAAGGGCa -3'
miRNA:   3'- caaGUUGUau-UUCC-GUUUGCUUUCCG- -5'
3451 5' -42.1 NC_001604.1 + 21335 1.16 0.006256
Target:  5'- aGUUCAACAUAAAGGCAAACGAAAGGCg -3'
miRNA:   3'- -CAAGUUGUAUUUCCGUUUGCUUUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.