miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3457 5' -51.1 NC_001604.1 + 33253 0.67 0.766148
Target:  5'- ---aGGCGuUCUUAGCGAaGAACCCuAGg -3'
miRNA:   3'- cuuaUCGU-AGGGUCGCU-CUUGGGuUC- -5'
3457 5' -51.1 NC_001604.1 + 32376 0.67 0.744178
Target:  5'- --uUAGCGcCgCCAGUaGAGAACUCAGGg -3'
miRNA:   3'- cuuAUCGUaG-GGUCG-CUCUUGGGUUC- -5'
3457 5' -51.1 NC_001604.1 + 15808 0.69 0.628794
Target:  5'- cGGAU-GCGUCgaugCCAGCcuGAACCCAAGg -3'
miRNA:   3'- -CUUAuCGUAG----GGUCGcuCUUGGGUUC- -5'
3457 5' -51.1 NC_001604.1 + 23163 0.7 0.570409
Target:  5'- --cUGGC-UCCgGGCGAGAACCuCGAc -3'
miRNA:   3'- cuuAUCGuAGGgUCGCUCUUGG-GUUc -5'
3457 5' -51.1 NC_001604.1 + 34058 0.71 0.52466
Target:  5'- -cAUAGCAUagaaaccaCCAGCGAG-ACCCAu- -3'
miRNA:   3'- cuUAUCGUAg-------GGUCGCUCuUGGGUuc -5'
3457 5' -51.1 NC_001604.1 + 36973 1.1 0.001222
Target:  5'- cGAAUAGCAUCCCAGCGAGAACCCAAGg -3'
miRNA:   3'- -CUUAUCGUAGGGUCGCUCUUGGGUUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.