miRNA: 3'- aaUAUAUCUGGUguAAcUGC-CGUUAG- -5'
miRNA: 3'- aauAUAUCUGGUGuaaCUGCC-GUUAG- -5'
miRNA: 3'- aauaUAUCUGGuGUaACUGCCGUUAg -5'
miRNA: 3'- aauaUAUCUGGuGUAaCuGCCGUUAG- -5'
miRNA: 3'- -AAUAUAUCUGGUGUAACUGCCGUUAG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 3459 | 5' | -45 | NC_001604.1 | + | 12827 | 0.66 | 0.988676 |
|
Target: 5'- -cAUGUAGGCCAgcUUaGCGaGCAGUCu -3' miRNA: 3'- aaUAUAUCUGGUguAAcUGC-CGUUAG- -5' |
|||||||
| 3459 | 5' | -45 | NC_001604.1 | + | 39121 | 0.69 | 0.954682 |
|
Target: 5'- --cUAUAGACCACg--GAUGGuCAGUUc -3' miRNA: 3'- aauAUAUCUGGUGuaaCUGCC-GUUAG- -5' |
|||||||
| 3459 | 5' | -45 | NC_001604.1 | + | 33051 | 0.7 | 0.926812 |
|
Target: 5'- ---aGUAGACCcCA-UGAUGGCGAUg -3' miRNA: 3'- aauaUAUCUGGuGUaACUGCCGUUAg -5' |
|||||||
| 3459 | 5' | -45 | NC_001604.1 | + | 26933 | 0.71 | 0.890261 |
|
Target: 5'- ---gGUAGACC-CGUcGuCGGCAGUCu -3' miRNA: 3'- aauaUAUCUGGuGUAaCuGCCGUUAG- -5' |
|||||||
| 3459 | 5' | -45 | NC_001604.1 | + | 11302 | 1.08 | 0.007961 |
|
Target: 5'- aUUAUAUAGACCACAUUGACGGCAAUCc -3' miRNA: 3'- -AAUAUAUCUGGUGUAACUGCCGUUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home