miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
347 5' -55.6 AC_000011.1 + 13258 0.66 0.552731
Target:  5'- uGGACaGCAGCgugUUCUCCCccCGACc -3'
miRNA:   3'- -CCUGcCGUCGacaGAGAGGGa-GUUGa -5'
347 5' -55.6 AC_000011.1 + 27106 0.66 0.597541
Target:  5'- uGGugGcGCAGCUGaccuagCUCggCUUCGACa -3'
miRNA:   3'- -CCugC-CGUCGACa-----GAGagGGAGUUGa -5'
347 5' -55.6 AC_000011.1 + 4901 1.1 0.00041
Target:  5'- aGGACGGCAGCUGUCUCUCCCUCAACUa -3'
miRNA:   3'- -CCUGCCGUCGACAGAGAGGGAGUUGA- -5'
347 5' -55.6 AC_000011.1 + 25738 0.66 0.563855
Target:  5'- uGGCGGCGGCUGcUUCUUCCa----- -3'
miRNA:   3'- cCUGCCGUCGACaGAGAGGGaguuga -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.