miRNA: 3'- -CCGCCGCACa-----GUGCGGCUGCc----CACUA- -5'
miRNA: 3'- cC-GCCGCACaGUGCGGCuGC--------CCACUa -5'
miRNA: 3'- -CCGCCGCa--CAGUG-CGGC-----UGcCCACUa -5'
miRNA: 3'- -CCGCCGCACAGUGCGGCUGCCCACUA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 3472 | 5' | -60.2 | NC_001609.1 | + | 6519 | 0.66 | 0.141435 |
|
Target: 5'- cGGUGGCGUGagcuggCGCGCCGGUGaccuuGUGGUg -3' miRNA: 3'- -CCGCCGCACa-----GUGCGGCUGCc----CACUA- -5' |
|||||||
| 3472 | 5' | -60.2 | NC_001609.1 | + | 5139 | 0.67 | 0.114456 |
|
Target: 5'- cGuCGGCGUGaCACGCCGcCGcugcggucGGUGAa -3' miRNA: 3'- cC-GCCGCACaGUGCGGCuGC--------CCACUa -5' |
|||||||
| 3472 | 5' | -60.2 | NC_001609.1 | + | 6657 | 0.69 | 0.081593 |
|
Target: 5'- cGGCGGCGgucGUCACuGCCGggucaGCcGGUGGc -3' miRNA: 3'- -CCGCCGCa--CAGUG-CGGC-----UGcCCACUa -5' |
|||||||
| 3472 | 5' | -60.2 | NC_001609.1 | + | 5170 | 1.07 | 0.000051 |
|
Target: 5'- cGGCGGCGUGUCACGCCGACGGGUGAUu -3' miRNA: 3'- -CCGCCGCACAGUGCGGCUGCCCACUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home