Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 3479 | 5' | -59 | NC_001609.1 | + | 7811 | 0.66 | 0.153187 |
|
Target: 5'- cCGugGGAaauGCCGUAcCGCUGcCCGGa -3' miRNA: 3'- aGUugCCUg--UGGCGUaGCGGC-GGCCa -5' |
|||||||
| 3479 | 5' | -59 | NC_001609.1 | + | 7728 | 0.66 | 0.153187 |
|
Target: 5'- -uGACGGACGCaccacaGaCAUC-CCGCUGGg -3' miRNA: 3'- agUUGCCUGUGg-----C-GUAGcGGCGGCCa -5' |
|||||||
| 3479 | 5' | -59 | NC_001609.1 | + | 7195 | 0.67 | 0.144236 |
|
Target: 5'- gUCAcUGGAgGCgGcCAUCGCCGCUGa- -3' miRNA: 3'- -AGUuGCCUgUGgC-GUAGCGGCGGCca -5' |
|||||||
| 3479 | 5' | -59 | NC_001609.1 | + | 5140 | 0.67 | 0.127753 |
|
Target: 5'- gUCGGCGuGACacGCCGCcgCuGCgGUCGGUg -3' miRNA: 3'- -AGUUGC-CUG--UGGCGuaG-CGgCGGCCA- -5' |
|||||||
| 3479 | 5' | -59 | NC_001609.1 | + | 8229 | 0.68 | 0.119813 |
|
Target: 5'- aCGGCGGGCACUGCGUucaucacCGgCGaCGGUg -3' miRNA: 3'- aGUUGCCUGUGGCGUA-------GCgGCgGCCA- -5' |
|||||||
| 3479 | 5' | -59 | NC_001609.1 | + | 5246 | 1.08 | 0.000057 |
|
Target: 5'- gUCAACGGACACCGCAUCGCCGCCGGUg -3' miRNA: 3'- -AGUUGCCUGUGGCGUAGCGGCGGCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home