miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
348 3' -62 AC_000011.1 + 13364 0.66 0.30006
Target:  5'- uGCUgCCGCGGCgGUgCCCgAGgCCGCc- -3'
miRNA:   3'- -UGAgGGCGUCGgCA-GGG-UUgGGCGcu -5'
348 3' -62 AC_000011.1 + 22957 0.66 0.284919
Target:  5'- aGCU-CCGCuuGCCGUCCUucucgguGAUCCGCa- -3'
miRNA:   3'- -UGAgGGCGu-CGGCAGGG-------UUGGGCGcu -5'
348 3' -62 AC_000011.1 + 30554 0.66 0.278617
Target:  5'- uCUUCUGCcGCCGcauUCCCAACgCGCa- -3'
miRNA:   3'- uGAGGGCGuCGGC---AGGGUUGgGCGcu -5'
348 3' -62 AC_000011.1 + 17000 0.66 0.271745
Target:  5'- cACUCgCCGCcGCCGUCgCC-GCaCCGCc- -3'
miRNA:   3'- -UGAG-GGCGuCGGCAG-GGuUG-GGCGcu -5'
348 3' -62 AC_000011.1 + 27136 0.67 0.258412
Target:  5'- cAUUCaauCGUAGCCGUCCacCGACUCGCuGAu -3'
miRNA:   3'- -UGAGg--GCGUCGGCAGG--GUUGGGCG-CU- -5'
348 3' -62 AC_000011.1 + 3580 0.67 0.245618
Target:  5'- -aUCCaCGguggaCGGCCGgCCCGugcaGCCCGCGAa -3'
miRNA:   3'- ugAGG-GC-----GUCGGCaGGGU----UGGGCGCU- -5'
348 3' -62 AC_000011.1 + 17785 0.67 0.227418
Target:  5'- --aCCCGguGCCG-CCCGccgGCuCCGUGGa -3'
miRNA:   3'- ugaGGGCguCGGCaGGGU---UG-GGCGCU- -5'
348 3' -62 AC_000011.1 + 21180 0.68 0.194438
Target:  5'- aGCUCCUGCucGCCGg---AGCCCGCGGc -3'
miRNA:   3'- -UGAGGGCGu-CGGCagggUUGGGCGCU- -5'
348 3' -62 AC_000011.1 + 21906 0.69 0.16572
Target:  5'- -gUUCCGCAaCgUGUCCCuGCCCGCGGg -3'
miRNA:   3'- ugAGGGCGUcG-GCAGGGuUGGGCGCU- -5'
348 3' -62 AC_000011.1 + 22070 0.7 0.152836
Target:  5'- aACUCCCGCGcGCagaacgcggGUCCCAACU-GCGAu -3'
miRNA:   3'- -UGAGGGCGU-CGg--------CAGGGUUGGgCGCU- -5'
348 3' -62 AC_000011.1 + 23479 0.7 0.148747
Target:  5'- cCUCCgaCGCGGCCGUCCCAGacaUGCa- -3'
miRNA:   3'- uGAGG--GCGUCGGCAGGGUUgg-GCGcu -5'
348 3' -62 AC_000011.1 + 3911 0.72 0.113039
Target:  5'- uGCUCCUGCAGCUGagCC-ACCUGCu- -3'
miRNA:   3'- -UGAGGGCGUCGGCagGGuUGGGCGcu -5'
348 3' -62 AC_000011.1 + 5168 1.08 0.000168
Target:  5'- uACUCCCGCAGCCGUCCCAACCCGCGAa -3'
miRNA:   3'- -UGAGGGCGUCGGCAGGGUUGGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.