miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3480 5' -63.1 NC_001609.1 + 9904 0.66 0.088105
Target:  5'- aGCACGGCCACCGccuaccggaaGGCACa-UCAu -3'
miRNA:   3'- gCGUGCCGGUGGCcg--------CCGUGccAGUu -5'
3480 5' -63.1 NC_001609.1 + 11148 0.66 0.082856
Target:  5'- aGCACGGCacagCACUGGCGGCcgcACuGG-CAc -3'
miRNA:   3'- gCGUGCCG----GUGGCCGCCG---UG-CCaGUu -5'
3480 5' -63.1 NC_001609.1 + 6940 0.66 0.080097
Target:  5'- gCGCuCGGCCACUGGCcgcguauucucccGGCGCuGGggauUCAGg -3'
miRNA:   3'- -GCGuGCCGGUGGCCG-------------CCGUG-CC----AGUU- -5'
3480 5' -63.1 NC_001609.1 + 5590 0.67 0.073239
Target:  5'- gCGCugGcuugaccguGCCGCCGGUGGCcguGCGGa--- -3'
miRNA:   3'- -GCGugC---------CGGUGGCCGCCG---UGCCaguu -5'
3480 5' -63.1 NC_001609.1 + 6658 0.67 0.071892
Target:  5'- gGCgGCGGUCgucacugccgggucaGCCGGUGGCAggcugcCGGUCAc -3'
miRNA:   3'- gCG-UGCCGG---------------UGGCCGCCGU------GCCAGUu -5'
3480 5' -63.1 NC_001609.1 + 5257 0.67 0.071892
Target:  5'- cCGCAUcGCCGCCGGUgauggccuugaguccGGCACcGUCGc -3'
miRNA:   3'- -GCGUGcCGGUGGCCG---------------CCGUGcCAGUu -5'
3480 5' -63.1 NC_001609.1 + 7542 0.68 0.058932
Target:  5'- aGC-CGGgcagCACCGGUGGCGCGGg--- -3'
miRNA:   3'- gCGuGCCg---GUGGCCGCCGUGCCaguu -5'
3480 5' -63.1 NC_001609.1 + 5545 1.06 0.000028
Target:  5'- cCGCACGGCCACCGGCGGCACGGUCAAg -3'
miRNA:   3'- -GCGUGCCGGUGGCCGCCGUGCCAGUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.