miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3483 3' -61 NC_001609.1 + 7597 0.66 0.123116
Target:  5'- cUCCgGCCauuucuuucaguaccGCAuGCCGGuuuACGGGGCUGc -3'
miRNA:   3'- -AGGgCGG---------------UGUcUGGCC---UGUCCCGACu -5'
3483 3' -61 NC_001609.1 + 5874 0.66 0.110679
Target:  5'- -gCCGCCACAGGacuuugcCCGGgaugugGCcGGGCUGu -3'
miRNA:   3'- agGGCGGUGUCU-------GGCC------UGuCCCGACu -5'
3483 3' -61 NC_001609.1 + 6089 0.69 0.074325
Target:  5'- uUCCaGUCACcgaAGACCGGcgGCAGGGCa-- -3'
miRNA:   3'- -AGGgCGGUG---UCUGGCC--UGUCCCGacu -5'
3483 3' -61 NC_001609.1 + 6842 1.08 0.00003
Target:  5'- cUCCCGCCACAGACCGGACAGGGCUGAu -3'
miRNA:   3'- -AGGGCGGUGUCUGGCCUGUCCCGACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.