miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3488 5' -60.8 NC_001609.1 + 7246 0.66 0.11872
Target:  5'- cAGC-GCgACGGUaaaggGCAGCGCguaagacgGGCGGUa -3'
miRNA:   3'- -UCGuCG-UGCCG-----UGUCGUGa-------CCGCCGg -5'
3488 5' -60.8 NC_001609.1 + 6106 0.66 0.11872
Target:  5'- cGGCGGCAgGGCaacaacaccuucACAcGCAUcuGCGGCUg -3'
miRNA:   3'- -UCGUCGUgCCG------------UGU-CGUGacCGCCGG- -5'
3488 5' -60.8 NC_001609.1 + 6692 0.66 0.11872
Target:  5'- aGGCuGC-CGGuCACGGCAgccacCUuuGCGGCCg -3'
miRNA:   3'- -UCGuCGuGCC-GUGUCGU-----GAc-CGCCGG- -5'
3488 5' -60.8 NC_001609.1 + 9602 0.66 0.10491
Target:  5'- uGCAacccGCACuGGCACA--ACUGGaaaaGGCCa -3'
miRNA:   3'- uCGU----CGUG-CCGUGUcgUGACCg---CCGG- -5'
3488 5' -60.8 NC_001609.1 + 5348 0.66 0.101385
Target:  5'- cGCGGCACGuucacGCGgggauucCAGCGucucgaUGGUGGCCg -3'
miRNA:   3'- uCGUCGUGC-----CGU-------GUCGUg-----ACCGCCGG- -5'
3488 5' -60.8 NC_001609.1 + 5314 0.67 0.098278
Target:  5'- gAGCGGCgACGGUGCcGgACUcaaggccaucaccGGCGGCg -3'
miRNA:   3'- -UCGUCG-UGCCGUGuCgUGA-------------CCGCCGg -5'
3488 5' -60.8 NC_001609.1 + 6925 0.67 0.09262
Target:  5'- gAGC-GCAUGGCugA-CGgUGGCGGUUa -3'
miRNA:   3'- -UCGuCGUGCCGugUcGUgACCGCCGG- -5'
3488 5' -60.8 NC_001609.1 + 6826 0.68 0.076718
Target:  5'- gAGgGGCGCGGCACcuGGUACUGcaaucaguGUGGUg -3'
miRNA:   3'- -UCgUCGUGCCGUG--UCGUGAC--------CGCCGg -5'
3488 5' -60.8 NC_001609.1 + 8505 0.69 0.05954
Target:  5'- uGGUAGCucagGCGGgGCAGC-CUccgGGCuGGCCg -3'
miRNA:   3'- -UCGUCG----UGCCgUGUCGuGA---CCG-CCGG- -5'
3488 5' -60.8 NC_001609.1 + 11249 0.7 0.049164
Target:  5'- cGCuGUAUGGCACAGUuucgGGCaauGGCCg -3'
miRNA:   3'- uCGuCGUGCCGUGUCGuga-CCG---CCGG- -5'
3488 5' -60.8 NC_001609.1 + 5954 0.71 0.041881
Target:  5'- gAGCAuUACGGCGaGGCGCUcGCGGUCg -3'
miRNA:   3'- -UCGUcGUGCCGUgUCGUGAcCGCCGG- -5'
3488 5' -60.8 NC_001609.1 + 5557 0.71 0.041881
Target:  5'- cGGCGGCACGGUcaagcCAGCGCcagaaGGCGGg- -3'
miRNA:   3'- -UCGUCGUGCCGu----GUCGUGa----CCGCCgg -5'
3488 5' -60.8 NC_001609.1 + 7538 0.71 0.040556
Target:  5'- gGGCAGCACcgguGGCGCGGgAaUGGCGGg- -3'
miRNA:   3'- -UCGUCGUG----CCGUGUCgUgACCGCCgg -5'
3488 5' -60.8 NC_001609.1 + 10219 0.72 0.036824
Target:  5'- uGGCAgGCAcacCGGCACAGCGCaagGuGUGGCa -3'
miRNA:   3'- -UCGU-CGU---GCCGUGUCGUGa--C-CGCCGg -5'
3488 5' -60.8 NC_001609.1 + 10927 0.74 0.02581
Target:  5'- aAGCAGCAUGGCuGCAacGCaaaaaugaGCUGGCagcGGCCg -3'
miRNA:   3'- -UCGUCGUGCCG-UGU--CG--------UGACCG---CCGG- -5'
3488 5' -60.8 NC_001609.1 + 7042 0.74 0.021946
Target:  5'- aGGaCAGCgACGGCGCGGC-CUucaGGgGGCCg -3'
miRNA:   3'- -UC-GUCG-UGCCGUGUCGuGA---CCgCCGG- -5'
3488 5' -60.8 NC_001609.1 + 11144 1.11 1.4e-05
Target:  5'- cAGCAGCACGGCACAGCACUGGCGGCCg -3'
miRNA:   3'- -UCGUCGUGCCGUGUCGUGACCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.