miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
349 3' -52.8 AC_000011.1 + 23326 0.66 0.703199
Target:  5'- gGAAGG--GGCUCUGCcaGCCAuccGCCa -3'
miRNA:   3'- gUUUCCauUCGAGGCG--CGGUuucCGG- -5'
349 3' -52.8 AC_000011.1 + 12874 0.66 0.713414
Target:  5'- --uAGGUcuGCUCguccacgUGCGCCu--GGCCg -3'
miRNA:   3'- guuUCCAuuCGAG-------GCGCGGuuuCCGG- -5'
349 3' -52.8 AC_000011.1 + 15507 0.66 0.70092
Target:  5'- aGAAGGUGcGGCUCgagaggaCGCGCgGcgcgacuaugcccAGGGCCu -3'
miRNA:   3'- gUUUCCAU-UCGAG-------GCGCGgU-------------UUCCGG- -5'
349 3' -52.8 AC_000011.1 + 12254 0.66 0.725801
Target:  5'- ---uGGUGgagaacaaGGCcaUCCGCGgCGacGAGGCCg -3'
miRNA:   3'- guuuCCAU--------UCG--AGGCGCgGU--UUCCGG- -5'
349 3' -52.8 AC_000011.1 + 5179 0.67 0.668748
Target:  5'- -cAGGGUcgcAGCgUCCGCGUCAGgguGGUCu -3'
miRNA:   3'- guUUCCAu--UCG-AGGCGCGGUUu--CCGG- -5'
349 3' -52.8 AC_000011.1 + 26830 0.67 0.645568
Target:  5'- ---uGGUGAGCUCUuCGCU--GGGUCu -3'
miRNA:   3'- guuuCCAUUCGAGGcGCGGuuUCCGG- -5'
349 3' -52.8 AC_000011.1 + 10978 0.67 0.633951
Target:  5'- gAGAGGgcgagGGGCUggCGCGCCuGGGGGCg -3'
miRNA:   3'- gUUUCCa----UUCGAg-GCGCGG-UUUCCGg -5'
349 3' -52.8 AC_000011.1 + 24714 0.67 0.642084
Target:  5'- gCAGAGGUAGagguagacgcagucGCggauguagUCGCGCC--GGGCCu -3'
miRNA:   3'- -GUUUCCAUU--------------CGa-------GGCGCGGuuUCCGG- -5'
349 3' -52.8 AC_000011.1 + 17195 0.68 0.599136
Target:  5'- -cGAGG-AAGaaaaCCGCGCCGuagAAGGCUg -3'
miRNA:   3'- guUUCCaUUCga--GGCGCGGU---UUCCGG- -5'
349 3' -52.8 AC_000011.1 + 15849 0.68 0.610724
Target:  5'- gCGGGGGU--GCUCCgGUGCCGccGGGCg -3'
miRNA:   3'- -GUUUCCAuuCGAGG-CGCGGUu-UCCGg -5'
349 3' -52.8 AC_000011.1 + 15729 0.68 0.610724
Target:  5'- gCGGGGGUGuAGUUgCGCGC-GucGGCCa -3'
miRNA:   3'- -GUUUCCAU-UCGAgGCGCGgUuuCCGG- -5'
349 3' -52.8 AC_000011.1 + 12855 0.68 0.610724
Target:  5'- ----cGUGAGC--CGCGCCcuGGGCCa -3'
miRNA:   3'- guuucCAUUCGagGCGCGGuuUCCGG- -5'
349 3' -52.8 AC_000011.1 + 7767 0.68 0.610724
Target:  5'- uGAAGGggacGAGCUgCuuGCCGAAGGaCCc -3'
miRNA:   3'- gUUUCCa---UUCGAgGcgCGGUUUCC-GG- -5'
349 3' -52.8 AC_000011.1 + 9179 0.69 0.508365
Target:  5'- gCGAuGGUGGcGCgcaccUCGCGCuCGAAGGCCc -3'
miRNA:   3'- -GUUuCCAUU-CGa----GGCGCG-GUUUCCGG- -5'
349 3' -52.8 AC_000011.1 + 8122 0.69 0.530609
Target:  5'- uCGAuGGUggucaugcugacGAGC-CCGCGCgGGAGGCa -3'
miRNA:   3'- -GUUuCCA------------UUCGaGGCGCGgUUUCCGg -5'
349 3' -52.8 AC_000011.1 + 27817 0.7 0.475772
Target:  5'- cCGGAGGUGAGCUCCGagGUCAAccaaccucuGGGa- -3'
miRNA:   3'- -GUUUCCAUUCGAGGCg-CGGUU---------UCCgg -5'
349 3' -52.8 AC_000011.1 + 8483 0.71 0.434009
Target:  5'- -cAGGGgcGGCUCgGgGcCCGGAGGCa -3'
miRNA:   3'- guUUCCauUCGAGgCgC-GGUUUCCGg -5'
349 3' -52.8 AC_000011.1 + 7151 0.71 0.394454
Target:  5'- uGGAGaaGGGCUgCUGCGCCuacAAGGCCg -3'
miRNA:   3'- gUUUCcaUUCGA-GGCGCGGu--UUCCGG- -5'
349 3' -52.8 AC_000011.1 + 13357 0.71 0.413941
Target:  5'- gCGAGGGU--GCUgCCGCggcgguGCCcGAGGCCg -3'
miRNA:   3'- -GUUUCCAuuCGA-GGCG------CGGuUUCCGG- -5'
349 3' -52.8 AC_000011.1 + 16545 0.72 0.37557
Target:  5'- gCAGcAGGUGcugccgaccgcGGCgCCGCGCCGGGGGUUc -3'
miRNA:   3'- -GUU-UCCAU-----------UCGaGGCGCGGUUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.