miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
349 5' -51.8 AC_000011.1 + 31678 0.66 0.77931
Target:  5'- -uGGCGCU--GCUGCagGAGCUCGUaGGa -3'
miRNA:   3'- cuCCGCGAguUGAUG--CUUGAGUA-CCa -5'
349 5' -51.8 AC_000011.1 + 7572 0.67 0.724263
Target:  5'- uGGGCGCUCGagcaGC-ACGGGCUCAg--- -3'
miRNA:   3'- cUCCGCGAGU----UGaUGCUUGAGUacca -5'
349 5' -51.8 AC_000011.1 + 3717 0.67 0.689874
Target:  5'- uGGGCGCcggCuACUACGGcACUC-UGGUg -3'
miRNA:   3'- cUCCGCGa--GuUGAUGCU-UGAGuACCA- -5'
349 5' -51.8 AC_000011.1 + 20518 0.67 0.689874
Target:  5'- cGGuGCGCUUGAUUuCGAACUCGuUGGg -3'
miRNA:   3'- cUC-CGCGAGUUGAuGCUUGAGU-ACCa -5'
349 5' -51.8 AC_000011.1 + 4936 0.67 0.682916
Target:  5'- gGAGGCGCUCuccccccagggaUAgGAGCUCcUGGa -3'
miRNA:   3'- -CUCCGCGAGuug---------AUgCUUGAGuACCa -5'
349 5' -51.8 AC_000011.1 + 35278 0.7 0.538588
Target:  5'- aGGGCGCUCuGC-GCGAGCucuuuaUCAUGGc -3'
miRNA:   3'- cUCCGCGAGuUGaUGCUUG------AGUACCa -5'
349 5' -51.8 AC_000011.1 + 5391 1.07 0.00154
Target:  5'- cGAGGCGCUCAACUACGAACUCAUGGUc -3'
miRNA:   3'- -CUCCGCGAGUUGAUGCUUGAGUACCA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.