miRNA display CGI


Results 1 - 3 of 3 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3500 5' -52.7 NC_001623.1 + 32024 0.68 0.91747
Target:  5'- cAGGAGcgucGGCGUUAACGAcgguaucaaACgaccaaugccggugGCUCGAGa -3'
miRNA:   3'- -UCCUU----CCGCAGUUGCU---------UGa-------------CGAGCUC- -5'
3500 5' -52.7 NC_001623.1 + 30479 0.7 0.842917
Target:  5'- uAGGcGGGUGUgAuuCGGACUGCUUGAc -3'
miRNA:   3'- -UCCuUCCGCAgUu-GCUUGACGAGCUc -5'
3500 5' -52.7 NC_001623.1 + 2485 1.1 0.004336
Target:  5'- gAGGAAGGCGUCAACGAACUGCUCGAGg -3'
miRNA:   3'- -UCCUUCCGCAGUUGCUUGACGAGCUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.