miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3501 5' -44.7 NC_001623.1 + 129413 0.66 0.999995
Target:  5'- uUCAACUAUGAaguagaaaaaacaGUUUG-UCGCGGcaGCGa -3'
miRNA:   3'- -AGUUGAUGUU-------------UAAACuAGCGCC--UGCa -5'
3501 5' -44.7 NC_001623.1 + 44363 0.66 0.999995
Target:  5'- aCAugUACAA--UUGcuGUCGCGG-CGUu -3'
miRNA:   3'- aGUugAUGUUuaAAC--UAGCGCCuGCA- -5'
3501 5' -44.7 NC_001623.1 + 68444 0.66 0.999989
Target:  5'- aUAAUUACAcGUUUGA-CGCGGAa-- -3'
miRNA:   3'- aGUUGAUGUuUAAACUaGCGCCUgca -5'
3501 5' -44.7 NC_001623.1 + 9849 0.67 0.999979
Target:  5'- aCAAaaGCGAGUUUGAU-GCGGuCGUc -3'
miRNA:   3'- aGUUgaUGUUUAAACUAgCGCCuGCA- -5'
3501 5' -44.7 NC_001623.1 + 92604 0.67 0.999979
Target:  5'- gUCAugUACGcGUUaaaUGAaCGCGGACc- -3'
miRNA:   3'- -AGUugAUGUuUAA---ACUaGCGCCUGca -5'
3501 5' -44.7 NC_001623.1 + 90866 0.67 0.999961
Target:  5'- ---uUUGCGAAcuggacUGGUUGCGGACGUg -3'
miRNA:   3'- aguuGAUGUUUaa----ACUAGCGCCUGCA- -5'
3501 5' -44.7 NC_001623.1 + 55552 0.68 0.999947
Target:  5'- uUCAaaGCUAUGug--UGuUCGCGGACGg -3'
miRNA:   3'- -AGU--UGAUGUuuaaACuAGCGCCUGCa -5'
3501 5' -44.7 NC_001623.1 + 5858 0.68 0.999947
Target:  5'- gCuuUUugGAAUUauuucUGAUUGCGGGCGUu -3'
miRNA:   3'- aGuuGAugUUUAA-----ACUAGCGCCUGCA- -5'
3501 5' -44.7 NC_001623.1 + 89456 0.69 0.999726
Target:  5'- uUCAACca-AAGcUUGAUCGUGGACa- -3'
miRNA:   3'- -AGUUGaugUUUaAACUAGCGCCUGca -5'
3501 5' -44.7 NC_001623.1 + 55103 0.74 0.978485
Target:  5'- aUCAGCUACAccacGUUUGuggCGCcGGGCGUg -3'
miRNA:   3'- -AGUUGAUGUu---UAAACua-GCG-CCUGCA- -5'
3501 5' -44.7 NC_001623.1 + 5991 1.1 0.029352
Target:  5'- cUCAACUACAAAUUUGAUCGCGGACGUg -3'
miRNA:   3'- -AGUUGAUGUUUAAACUAGCGCCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.