miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3502 3' -52.3 NC_001623.1 + 113048 0.66 0.968824
Target:  5'- uUCCGucGGCgAGAGAaaaauacgcaucgGGCgaAGCGGCGUg -3'
miRNA:   3'- -AGGCuuCCG-UCUUUa------------UCG--UCGUCGCA- -5'
3502 3' -52.3 NC_001623.1 + 100885 0.66 0.966888
Target:  5'- uUUCGGAcGGCGGuucAAUaAGCGGCGcGCGUg -3'
miRNA:   3'- -AGGCUU-CCGUCu--UUA-UCGUCGU-CGCA- -5'
3502 3' -52.3 NC_001623.1 + 55713 0.66 0.959826
Target:  5'- gCgGggGGUuGAGGaGGCGGUGGCGg -3'
miRNA:   3'- aGgCuuCCGuCUUUaUCGUCGUCGCa -5'
3502 3' -52.3 NC_001623.1 + 69987 0.67 0.951789
Target:  5'- cUCgGgcGGUGGAGGUGGUgcgguuGGCGGCGc -3'
miRNA:   3'- -AGgCuuCCGUCUUUAUCG------UCGUCGCa -5'
3502 3' -52.3 NC_001623.1 + 94818 0.67 0.951789
Target:  5'- -aCGGAGGUuu---UAGCAGCGGCa- -3'
miRNA:   3'- agGCUUCCGucuuuAUCGUCGUCGca -5'
3502 3' -52.3 NC_001623.1 + 34810 0.67 0.94274
Target:  5'- -gUGAAGGCu---GUGGCAGC-GCGUg -3'
miRNA:   3'- agGCUUCCGucuuUAUCGUCGuCGCA- -5'
3502 3' -52.3 NC_001623.1 + 36974 0.67 0.932653
Target:  5'- -----cGGCAGugGUAGUAGUAGCGg -3'
miRNA:   3'- aggcuuCCGUCuuUAUCGUCGUCGCa -5'
3502 3' -52.3 NC_001623.1 + 78165 0.68 0.927216
Target:  5'- cCCaAAGGacugGGAGAaGGCGGCGGCGa -3'
miRNA:   3'- aGGcUUCCg---UCUUUaUCGUCGUCGCa -5'
3502 3' -52.3 NC_001623.1 + 87587 0.68 0.915551
Target:  5'- uUCgGAAGGCugcGcgGgcGCGGCGGCGUu -3'
miRNA:   3'- -AGgCUUCCGu--CuuUauCGUCGUCGCA- -5'
3502 3' -52.3 NC_001623.1 + 55798 0.69 0.874364
Target:  5'- uUCUGgcGGCuGuguUGGCGGCGGUGUc -3'
miRNA:   3'- -AGGCuuCCGuCuuuAUCGUCGUCGCA- -5'
3502 3' -52.3 NC_001623.1 + 78206 0.7 0.833467
Target:  5'- --aGGAGGaauaGGAGAaGGCGGCGGCGa -3'
miRNA:   3'- aggCUUCCg---UCUUUaUCGUCGUCGCa -5'
3502 3' -52.3 NC_001623.1 + 16392 0.71 0.786587
Target:  5'- aCCGAAgugguGGUAGAAGUgguagaaGGCGGguGCGUu -3'
miRNA:   3'- aGGCUU-----CCGUCUUUA-------UCGUCguCGCA- -5'
3502 3' -52.3 NC_001623.1 + 78243 0.72 0.737789
Target:  5'- gUUGGAGGaauaGGAGAaGGCGGCGGCGa -3'
miRNA:   3'- aGGCUUCCg---UCUUUaUCGUCGUCGCa -5'
3502 3' -52.3 NC_001623.1 + 6060 0.83 0.218144
Target:  5'- -gCGGAGGCGGAGGUGGUGGCGGUGa -3'
miRNA:   3'- agGCUUCCGUCUUUAUCGUCGUCGCa -5'
3502 3' -52.3 NC_001623.1 + 16599 1.09 0.004905
Target:  5'- cUCCGAAGGCAGAAAUAGCAGCAGCGUg -3'
miRNA:   3'- -AGGCUUCCGUCUUUAUCGUCGUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.