miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3502 5' -53.3 NC_001623.1 + 120774 0.66 0.93231
Target:  5'- -cGCGCAgCCCGCgUgCUACCACc--- -3'
miRNA:   3'- auUGCGU-GGGCGgAaGAUGGUGaaga -5'
3502 5' -53.3 NC_001623.1 + 61517 0.67 0.915317
Target:  5'- cGGCGcCGCCCGCCga--ACCGCUaacUCa -3'
miRNA:   3'- aUUGC-GUGGGCGGaagaUGGUGA---AGa -5'
3502 5' -53.3 NC_001623.1 + 31034 0.67 0.915317
Target:  5'- gAACGCGCCCGCCgccgacaUGaacgaCACUUUUu -3'
miRNA:   3'- aUUGCGUGGGCGGaag----AUg----GUGAAGA- -5'
3502 5' -53.3 NC_001623.1 + 113217 0.68 0.896014
Target:  5'- -uGCGCAUCCGUUUUg-ACCAUUUCg -3'
miRNA:   3'- auUGCGUGGGCGGAAgaUGGUGAAGa -5'
3502 5' -53.3 NC_001623.1 + 58574 0.68 0.881895
Target:  5'- ---aGCACuuGCCUUCUuCCAUgUCUu -3'
miRNA:   3'- auugCGUGggCGGAAGAuGGUGaAGA- -5'
3502 5' -53.3 NC_001623.1 + 16439 0.69 0.842503
Target:  5'- -cACGCugCUgcuauuucuGCCUUCggagACCACUUCc -3'
miRNA:   3'- auUGCGugGG---------CGGAAGa---UGGUGAAGa -5'
3502 5' -53.3 NC_001623.1 + 107271 0.72 0.708442
Target:  5'- gUGugGCGCCUGCUgggcgUUUGCCACU-CUg -3'
miRNA:   3'- -AUugCGUGGGCGGa----AGAUGGUGAaGA- -5'
3502 5' -53.3 NC_001623.1 + 16565 1.07 0.005325
Target:  5'- gUAACGCACCCGCCUUCUACCACUUCUa -3'
miRNA:   3'- -AUUGCGUGGGCGGAAGAUGGUGAAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.