miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3506 5' -62.5 NC_001623.1 + 65327 0.66 0.637663
Target:  5'- cAUGCGGGCGgcgguguuguaGUCGUaCGCGCUcGCGc -3'
miRNA:   3'- -UGCGCCUGCag---------CAGCG-GCGCGGuCGC- -5'
3506 5' -62.5 NC_001623.1 + 20377 0.66 0.629838
Target:  5'- uUGCGaGucuuCGUCGggCGCCGCGCUguuGGUGu -3'
miRNA:   3'- uGCGC-Cu---GCAGCa-GCGGCGCGG---UCGC- -5'
3506 5' -62.5 NC_001623.1 + 54289 0.66 0.629838
Target:  5'- -aGCuuuGuCGUCGgCGCCGCaGCCGGCa -3'
miRNA:   3'- ugCGc--CuGCAGCaGCGGCG-CGGUCGc -5'
3506 5' -62.5 NC_001623.1 + 65904 0.66 0.620057
Target:  5'- cACGUaGugGUaguaaUCGCCGcCGCCGGCa -3'
miRNA:   3'- -UGCGcCugCAgc---AGCGGC-GCGGUCGc -5'
3506 5' -62.5 NC_001623.1 + 95046 0.66 0.610285
Target:  5'- aGCGCaauuGGAUGgcaCGUCGCCcuucauaaGCCGGCGc -3'
miRNA:   3'- -UGCG----CCUGCa--GCAGCGGcg------CGGUCGC- -5'
3506 5' -62.5 NC_001623.1 + 23310 0.67 0.552183
Target:  5'- aACGC-GACGcCGUgcuuaUGCCGUGUCGGCa -3'
miRNA:   3'- -UGCGcCUGCaGCA-----GCGGCGCGGUCGc -5'
3506 5' -62.5 NC_001623.1 + 39802 0.67 0.552183
Target:  5'- gACGUGGGCGU-GUUGgCGUGCUuuuuAGCGc -3'
miRNA:   3'- -UGCGCCUGCAgCAGCgGCGCGG----UCGC- -5'
3506 5' -62.5 NC_001623.1 + 105680 0.67 0.541691
Target:  5'- uUGUGGGCGUCGcCauguacgGCCGCGgcuggaCCGGCGu -3'
miRNA:   3'- uGCGCCUGCAGCaG-------CGGCGC------GGUCGC- -5'
3506 5' -62.5 NC_001623.1 + 101390 0.67 0.533157
Target:  5'- cCGCGGAaaaaaacucuCGUCGUacauuaCGUCGCGCaCGGUGc -3'
miRNA:   3'- uGCGCCU----------GCAGCA------GCGGCGCG-GUCGC- -5'
3506 5' -62.5 NC_001623.1 + 87759 0.68 0.505077
Target:  5'- uGCGCGaGCcaaCGcCGCCGCGCCcGCGc -3'
miRNA:   3'- -UGCGCcUGca-GCaGCGGCGCGGuCGC- -5'
3506 5' -62.5 NC_001623.1 + 66617 0.68 0.505077
Target:  5'- cGCGCGuGGCGaCgGUCGuaggcaCCGuCGCCGGCGg -3'
miRNA:   3'- -UGCGC-CUGCaG-CAGC------GGC-GCGGUCGC- -5'
3506 5' -62.5 NC_001623.1 + 33775 0.68 0.477653
Target:  5'- aACGCGGGCccacguGUUGgCGuuGCGCCAGa- -3'
miRNA:   3'- -UGCGCCUG------CAGCaGCggCGCGGUCgc -5'
3506 5' -62.5 NC_001623.1 + 12097 0.69 0.41674
Target:  5'- -gGUGGACGggGU-GCCGCGCCAcgGCGc -3'
miRNA:   3'- ugCGCCUGCagCAgCGGCGCGGU--CGC- -5'
3506 5' -62.5 NC_001623.1 + 127262 0.7 0.392124
Target:  5'- gACGCucgGGACGgCGUCGaaGCGCUGGUGu -3'
miRNA:   3'- -UGCG---CCUGCaGCAGCggCGCGGUCGC- -5'
3506 5' -62.5 NC_001623.1 + 55692 0.71 0.345822
Target:  5'- -gGCGGugGUUGcaUCGCgggcacggGCGCCGGCGg -3'
miRNA:   3'- ugCGCCugCAGC--AGCGg-------CGCGGUCGC- -5'
3506 5' -62.5 NC_001623.1 + 87824 1.07 0.001041
Target:  5'- aACGCGGACGUCGUCGCCGCGCCAGCGu -3'
miRNA:   3'- -UGCGCCUGCAGCAGCGGCGCGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.