miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3507 3' -52.5 NC_001623.1 + 65498 0.66 0.972588
Target:  5'- -aG-CGCGAGCGCGuacGAcuacaacACCGCCGc -3'
miRNA:   3'- uaCaGCGUUCGUGCuu-CUu------UGGCGGC- -5'
3507 3' -52.5 NC_001623.1 + 14612 0.66 0.972588
Target:  5'- cAUGUCGguGugaucguugacGCACGAGuuguacGAuuCCGCCGg -3'
miRNA:   3'- -UACAGCguU-----------CGUGCUU------CUuuGGCGGC- -5'
3507 3' -52.5 NC_001623.1 + 6317 0.66 0.967743
Target:  5'- gGUGgaggCGCuggaauguuAGGCACgGGAGAAggugguggcggcgguGCCGCCGg -3'
miRNA:   3'- -UACa---GCG---------UUCGUG-CUUCUU---------------UGGCGGC- -5'
3507 3' -52.5 NC_001623.1 + 34280 0.66 0.966442
Target:  5'- -cGUCgGCAAGCACGccGccguuGGGCCgGCCGu -3'
miRNA:   3'- uaCAG-CGUUCGUGCuuC-----UUUGG-CGGC- -5'
3507 3' -52.5 NC_001623.1 + 55680 0.66 0.963029
Target:  5'- --aUCGCGGGCACGGGc--GCCGgCGg -3'
miRNA:   3'- uacAGCGUUCGUGCUUcuuUGGCgGC- -5'
3507 3' -52.5 NC_001623.1 + 66183 0.66 0.963029
Target:  5'- cUGUUGCucAAGCACGccacucuGCCGCCa -3'
miRNA:   3'- uACAGCG--UUCGUGCuucuu--UGGCGGc -5'
3507 3' -52.5 NC_001623.1 + 102007 0.67 0.955495
Target:  5'- -aGUCGCGcGuCACGAuauccacgcGGAGACgCGCCu -3'
miRNA:   3'- uaCAGCGUuC-GUGCU---------UCUUUG-GCGGc -5'
3507 3' -52.5 NC_001623.1 + 129489 0.67 0.955495
Target:  5'- aGUGUgGC-GGCGCuaaacAAGAAauaGCCGCCGg -3'
miRNA:   3'- -UACAgCGuUCGUGc----UUCUU---UGGCGGC- -5'
3507 3' -52.5 NC_001623.1 + 28087 0.67 0.951362
Target:  5'- uUGU-GUgcGCACgGAAGGAGCUGCCa -3'
miRNA:   3'- uACAgCGuuCGUG-CUUCUUUGGCGGc -5'
3507 3' -52.5 NC_001623.1 + 30935 0.67 0.951362
Target:  5'- cGUG-CGCGAGUuugugGAAGAAACUgGCCGg -3'
miRNA:   3'- -UACaGCGUUCGug---CUUCUUUGG-CGGC- -5'
3507 3' -52.5 NC_001623.1 + 119893 0.67 0.951362
Target:  5'- cGUG-CGCAuGUugGGAGAGACUuacaaaGCCGc -3'
miRNA:   3'- -UACaGCGUuCGugCUUCUUUGG------CGGC- -5'
3507 3' -52.5 NC_001623.1 + 129575 0.67 0.946981
Target:  5'- uAUGU-GCAAgguaaagacGC-CGGAGAAAUCGCCGa -3'
miRNA:   3'- -UACAgCGUU---------CGuGCUUCUUUGGCGGC- -5'
3507 3' -52.5 NC_001623.1 + 129387 0.68 0.926904
Target:  5'- uUGUCGC-GGCAgCGAuccguCCGCCGa -3'
miRNA:   3'- uACAGCGuUCGU-GCUucuuuGGCGGC- -5'
3507 3' -52.5 NC_001623.1 + 61849 0.7 0.850825
Target:  5'- cGUGUCGCAucuaAGCgACGAAGAcgacgcgacgguGAUCGCUa -3'
miRNA:   3'- -UACAGCGU----UCG-UGCUUCU------------UUGGCGGc -5'
3507 3' -52.5 NC_001623.1 + 75630 0.71 0.806313
Target:  5'- gGUGUUGCAGGCGaagcaggUGGAGGAAuaGCCGu -3'
miRNA:   3'- -UACAGCGUUCGU-------GCUUCUUUggCGGC- -5'
3507 3' -52.5 NC_001623.1 + 31054 0.71 0.797963
Target:  5'- -cGUCGCGcguaccggAGCGCGAAcgcgcccGCCGCCGa -3'
miRNA:   3'- uaCAGCGU--------UCGUGCUUcuu----UGGCGGC- -5'
3507 3' -52.5 NC_001623.1 + 88395 1.06 0.007314
Target:  5'- cAUGUCGCAAGCACGAAGAAACCGCCGc -3'
miRNA:   3'- -UACAGCGUUCGUGCUUCUUUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.