miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3508 5' -42.9 NC_001623.1 + 81221 0.66 1
Target:  5'- cGCUUGUGACGC-CGGUgCGuUUGu-- -3'
miRNA:   3'- aUGAACAUUGCGuGCUA-GCuAAUuac -5'
3508 5' -42.9 NC_001623.1 + 120813 0.66 1
Target:  5'- cACUUGacgcggGACGCAgCGuguaGUCGAUUAGUa -3'
miRNA:   3'- aUGAACa-----UUGCGU-GC----UAGCUAAUUAc -5'
3508 5' -42.9 NC_001623.1 + 43509 0.67 0.999999
Target:  5'- gACUUGgaauCGUACGAUCcAUUGAUu -3'
miRNA:   3'- aUGAACauu-GCGUGCUAGcUAAUUAc -5'
3508 5' -42.9 NC_001623.1 + 5264 0.67 0.999999
Target:  5'- gGCUUGUagaaguucucccaGAUGaCACGAUCGAUg---- -3'
miRNA:   3'- aUGAACA-------------UUGC-GUGCUAGCUAauuac -5'
3508 5' -42.9 NC_001623.1 + 7845 0.67 0.999999
Target:  5'- cUACgUGUAAaGCAUGAUCGug-AGUGg -3'
miRNA:   3'- -AUGaACAUUgCGUGCUAGCuaaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 97604 0.67 0.999999
Target:  5'- cUACUUGUAAaaCACaAUCGAggGAUGa -3'
miRNA:   3'- -AUGAACAUUgcGUGcUAGCUaaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 26697 0.72 0.999329
Target:  5'- cUACUUGUAACGCACGcccAagGGaUGAUGu -3'
miRNA:   3'- -AUGAACAUUGCGUGC---UagCUaAUUAC- -5'
3508 5' -42.9 NC_001623.1 + 561 0.81 0.878931
Target:  5'- cUACUUGUAACGCACGAUUaAUUAu-- -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGcUAAUuac -5'
3508 5' -42.9 NC_001623.1 + 117469 0.84 0.777039
Target:  5'- cUACUUGUAAUGCACGAUCaGUgGAUGa -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGcUAaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 97531 0.84 0.777039
Target:  5'- cUACUUGUAACGCAUGAUCaAggGAUGa -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGcUaaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 26614 0.84 0.777039
Target:  5'- cUACUUGUAACGCAUGAUCaAggGAUGa -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGcUaaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 71178 0.84 0.777039
Target:  5'- cUACUUGUAACGCAUGAUCaAggGAUGa -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGcUaaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 26392 0.84 0.777039
Target:  5'- cUACUUGUAACGCAUGAUCaAggGAUGa -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGcUaaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 70803 0.84 0.766576
Target:  5'- cUACUUGUAACGCACGAUUaGUgGAUGa -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGcUAaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 70691 0.85 0.712285
Target:  5'- cUACUUGUAACGCACGAUCaAUUAu-- -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGcUAAUuac -5'
3508 5' -42.9 NC_001623.1 + 97693 0.86 0.655866
Target:  5'- cUACUUGUAACGCAaGAUCGGUgGAUGa -3'
miRNA:   3'- -AUGAACAUUGCGUgCUAGCUAaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 381 0.88 0.576174
Target:  5'- cUACUUGUAACGCACGAUCaGUgGAUGa -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGcUAaUUAC- -5'
3508 5' -42.9 NC_001623.1 + 117571 1 0.16166
Target:  5'- cUACgUGUAACGCACGAUCGAUUGAUGa -3'
miRNA:   3'- -AUGaACAUUGCGUGCUAGCUAAUUAC- -5'
3508 5' -42.9 NC_001623.1 + 93508 1.09 0.049681
Target:  5'- cUACUUGUAACGCACGAUCGAUUAAUGa -3'
miRNA:   3'- -AUGAACAUUGCGUGCUAGCUAAUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.