miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
351 3' -48.3 AC_000011.1 + 33637 0.68 0.851222
Target:  5'- uCGgGUCGGuCAGGGAGAuGAAACCcuccGGGCa -3'
miRNA:   3'- -GCgCGGCU-GUUCCUUU-UUUUGG----UCUG- -5'
351 3' -48.3 AC_000011.1 + 28463 0.69 0.819451
Target:  5'- aGCGCCGugcacaggcuguaaGCGAuGGAGAAGACCAcGAUg -3'
miRNA:   3'- gCGCGGC--------------UGUUcCUUUUUUUGGU-CUG- -5'
351 3' -48.3 AC_000011.1 + 26109 0.71 0.712151
Target:  5'- aCGaGCCGGCGcaaacccGGGAgcuGAGGAACCGGAUc -3'
miRNA:   3'- -GCgCGGCUGU-------UCCU---UUUUUUGGUCUG- -5'
351 3' -48.3 AC_000011.1 + 25969 0.66 0.945284
Target:  5'- aGCGCCggGugAAGGAGAuguuGCCcccgcAGGCc -3'
miRNA:   3'- gCGCGG--CugUUCCUUUuuu-UGG-----UCUG- -5'
351 3' -48.3 AC_000011.1 + 25535 0.67 0.893654
Target:  5'- cCGC-CCGugGAGGAuuuggaGGAAGACUGGGa -3'
miRNA:   3'- -GCGcGGCugUUCCU------UUUUUUGGUCUg -5'
351 3' -48.3 AC_000011.1 + 24500 0.68 0.860287
Target:  5'- cCGCGUCGGCGAaGAAGc-GGCgCAGGCa -3'
miRNA:   3'- -GCGCGGCUGUUcCUUUuuUUG-GUCUG- -5'
351 3' -48.3 AC_000011.1 + 22519 0.75 0.479377
Target:  5'- gCGCGCUGA--AGGAGAAccccGACCGGGCc -3'
miRNA:   3'- -GCGCGGCUguUCCUUUUu---UUGGUCUG- -5'
351 3' -48.3 AC_000011.1 + 20406 0.66 0.922058
Target:  5'- gGUGCCGuCGAGGuaggggauGGAGCCcgaguAGACg -3'
miRNA:   3'- gCGCGGCuGUUCCuuu-----UUUUGG-----UCUG- -5'
351 3' -48.3 AC_000011.1 + 18688 0.66 0.922058
Target:  5'- gGUGCCGGaguAGGGuuuGAAGCUAGGg -3'
miRNA:   3'- gCGCGGCUgu-UCCUuu-UUUUGGUCUg -5'
351 3' -48.3 AC_000011.1 + 17363 0.67 0.893654
Target:  5'- cCGCGgCGAUGAuGGGGAucAGCgCGGGCa -3'
miRNA:   3'- -GCGCgGCUGUU-CCUUUuuUUG-GUCUG- -5'
351 3' -48.3 AC_000011.1 + 17186 0.68 0.869071
Target:  5'- aCGgGCUacCGAGGAAGAAAACCGcGCc -3'
miRNA:   3'- -GCgCGGcuGUUCCUUUUUUUGGUcUG- -5'
351 3' -48.3 AC_000011.1 + 17139 0.71 0.736361
Target:  5'- gCGCGCgCGGCAGGGucAGAGGugCGcGGCc -3'
miRNA:   3'- -GCGCG-GCUGUUCCu-UUUUUugGU-CUG- -5'
351 3' -48.3 AC_000011.1 + 16106 0.68 0.841887
Target:  5'- aGCGCaaauuCAAGGAAGAGAugcuCCAGGu -3'
miRNA:   3'- gCGCGgcu--GUUCCUUUUUUu---GGUCUg -5'
351 3' -48.3 AC_000011.1 + 15906 0.72 0.654301
Target:  5'- aGCGCCGGCAGgacccGGAGAcgcgcGGCCAcGGCg -3'
miRNA:   3'- gCGCGGCUGUU-----CCUUUuu---UUGGU-CUG- -5'
351 3' -48.3 AC_000011.1 + 15858 0.69 0.829365
Target:  5'- gCGCGCaUGGCGGGGGugcuccggugccGCCGGGCg -3'
miRNA:   3'- -GCGCG-GCUGUUCCUuuuuu-------UGGUCUG- -5'
351 3' -48.3 AC_000011.1 + 15850 0.66 0.939963
Target:  5'- gGCGCaCGggacGCAGGGccaugcucAGGGcgGCCAGACg -3'
miRNA:   3'- gCGCG-GC----UGUUCC--------UUUUuuUGGUCUG- -5'
351 3' -48.3 AC_000011.1 + 13610 0.68 0.841887
Target:  5'- gGCGUCG-CAGGGGGccacGAGCCGGGg -3'
miRNA:   3'- gCGCGGCuGUUCCUUuu--UUUGGUCUg -5'
351 3' -48.3 AC_000011.1 + 11838 0.71 0.713315
Target:  5'- gGgGCCGGgacCGAGGggGAGAGCUAcuuuGACa -3'
miRNA:   3'- gCgCGGCU---GUUCCuuUUUUUGGU----CUG- -5'
351 3' -48.3 AC_000011.1 + 11653 0.72 0.654301
Target:  5'- aCGUGCCcauaGACAAGGAGguGAAGAUC-GACg -3'
miRNA:   3'- -GCGCGG----CUGUUCCUU--UUUUUGGuCUG- -5'
351 3' -48.3 AC_000011.1 + 11335 0.66 0.945284
Target:  5'- uCGCGCgCGAgGAGGugacccuGGGCCuGAUg -3'
miRNA:   3'- -GCGCG-GCUgUUCCuuuu---UUUGGuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.