Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
351 | 3' | -48.3 | AC_000011.1 | + | 6239 | 1.1 | 0.002701 |
Target: 5'- gCGCGCCGACAAGGAAAAAAACCAGACc -3' miRNA: 3'- -GCGCGGCUGUUCCUUUUUUUGGUCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 18688 | 0.66 | 0.922058 |
Target: 5'- gGUGCCGGaguAGGGuuuGAAGCUAGGg -3' miRNA: 3'- gCGCGGCUgu-UCCUuu-UUUUGGUCUg -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 24500 | 0.68 | 0.860287 |
Target: 5'- cCGCGUCGGCGAaGAAGc-GGCgCAGGCa -3' miRNA: 3'- -GCGCGGCUGUUcCUUUuuUUG-GUCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 15858 | 0.69 | 0.829365 |
Target: 5'- gCGCGCaUGGCGGGGGugcuccggugccGCCGGGCg -3' miRNA: 3'- -GCGCG-GCUGUUCCUuuuuu-------UGGUCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 8836 | 0.7 | 0.760026 |
Target: 5'- gCGCGCCGGCcgcggagaccuucaaGAGGAGGAGaucgagcaguucauGACCgAGAUc -3' miRNA: 3'- -GCGCGGCUG---------------UUCCUUUUU--------------UUGG-UCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 17139 | 0.71 | 0.736361 |
Target: 5'- gCGCGCgCGGCAGGGucAGAGGugCGcGGCc -3' miRNA: 3'- -GCGCG-GCUGUUCCu-UUUUUugGU-CUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 25969 | 0.66 | 0.945284 |
Target: 5'- aGCGCCggGugAAGGAGAuguuGCCcccgcAGGCc -3' miRNA: 3'- gCGCGG--CugUUCCUUUuuu-UGG-----UCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 20406 | 0.66 | 0.922058 |
Target: 5'- gGUGCCGuCGAGGuaggggauGGAGCCcgaguAGACg -3' miRNA: 3'- gCGCGGCuGUUCCuuu-----UUUUGG-----UCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 28463 | 0.69 | 0.819451 |
Target: 5'- aGCGCCGugcacaggcuguaaGCGAuGGAGAAGACCAcGAUg -3' miRNA: 3'- gCGCGGC--------------UGUUcCUUUUUUUGGU-CUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 5339 | 0.73 | 0.570994 |
Target: 5'- gGCGCCGAUcGGGAGcgGuuuucgaccAGCCGGAUg -3' miRNA: 3'- gCGCGGCUGuUCCUUuuU---------UUGGUCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 9879 | 0.75 | 0.468409 |
Target: 5'- cCGCGCgGGCGAGGAGGAGGugCccguGGAg -3' miRNA: 3'- -GCGCGgCUGUUCCUUUUUUugG----UCUg -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 22519 | 0.75 | 0.479377 |
Target: 5'- gCGCGCUGA--AGGAGAAccccGACCGGGCc -3' miRNA: 3'- -GCGCGGCUguUCCUUUUu---UUGGUCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 17363 | 0.67 | 0.893654 |
Target: 5'- cCGCGgCGAUGAuGGGGAucAGCgCGGGCa -3' miRNA: 3'- -GCGCgGCUGUU-CCUUUuuUUG-GUCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 7137 | 0.66 | 0.939963 |
Target: 5'- uGCGCCuACAAGGccGucAACCAGu- -3' miRNA: 3'- gCGCGGcUGUUCCuuUuuUUGGUCug -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 25535 | 0.67 | 0.893654 |
Target: 5'- cCGC-CCGugGAGGAuuuggaGGAAGACUGGGa -3' miRNA: 3'- -GCGcGGCugUUCCU------UUUUUUGGUCUg -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 7549 | 0.67 | 0.893654 |
Target: 5'- gGgGuuGGCGcggAGGAAGGAAGuCCAGAg -3' miRNA: 3'- gCgCggCUGU---UCCUUUUUUU-GGUCUg -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 3695 | 0.68 | 0.877566 |
Target: 5'- aGCGCCGuGCGcGGAAu--GGCCauGGGCg -3' miRNA: 3'- gCGCGGC-UGUuCCUUuuuUUGG--UCUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 17186 | 0.68 | 0.869071 |
Target: 5'- aCGgGCUacCGAGGAAGAAAACCGcGCc -3' miRNA: 3'- -GCgCGGcuGUUCCUUUUUUUGGUcUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 15906 | 0.72 | 0.654301 |
Target: 5'- aGCGCCGGCAGgacccGGAGAcgcgcGGCCAcGGCg -3' miRNA: 3'- gCGCGGCUGUU-----CCUUUuu---UUGGU-CUG- -5' |
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351 | 3' | -48.3 | AC_000011.1 | + | 7853 | 0.69 | 0.791561 |
Target: 5'- uGCgaGCCGAUggGGAA--GAACUGGAUc -3' miRNA: 3'- gCG--CGGCUGuuCCUUuuUUUGGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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