miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
351 3' -48.3 AC_000011.1 + 6239 1.1 0.002701
Target:  5'- gCGCGCCGACAAGGAAAAAAACCAGACc -3'
miRNA:   3'- -GCGCGGCUGUUCCUUUUUUUGGUCUG- -5'
351 3' -48.3 AC_000011.1 + 18688 0.66 0.922058
Target:  5'- gGUGCCGGaguAGGGuuuGAAGCUAGGg -3'
miRNA:   3'- gCGCGGCUgu-UCCUuu-UUUUGGUCUg -5'
351 3' -48.3 AC_000011.1 + 24500 0.68 0.860287
Target:  5'- cCGCGUCGGCGAaGAAGc-GGCgCAGGCa -3'
miRNA:   3'- -GCGCGGCUGUUcCUUUuuUUG-GUCUG- -5'
351 3' -48.3 AC_000011.1 + 15858 0.69 0.829365
Target:  5'- gCGCGCaUGGCGGGGGugcuccggugccGCCGGGCg -3'
miRNA:   3'- -GCGCG-GCUGUUCCUuuuuu-------UGGUCUG- -5'
351 3' -48.3 AC_000011.1 + 8836 0.7 0.760026
Target:  5'- gCGCGCCGGCcgcggagaccuucaaGAGGAGGAGaucgagcaguucauGACCgAGAUc -3'
miRNA:   3'- -GCGCGGCUG---------------UUCCUUUUU--------------UUGG-UCUG- -5'
351 3' -48.3 AC_000011.1 + 17139 0.71 0.736361
Target:  5'- gCGCGCgCGGCAGGGucAGAGGugCGcGGCc -3'
miRNA:   3'- -GCGCG-GCUGUUCCu-UUUUUugGU-CUG- -5'
351 3' -48.3 AC_000011.1 + 25969 0.66 0.945284
Target:  5'- aGCGCCggGugAAGGAGAuguuGCCcccgcAGGCc -3'
miRNA:   3'- gCGCGG--CugUUCCUUUuuu-UGG-----UCUG- -5'
351 3' -48.3 AC_000011.1 + 20406 0.66 0.922058
Target:  5'- gGUGCCGuCGAGGuaggggauGGAGCCcgaguAGACg -3'
miRNA:   3'- gCGCGGCuGUUCCuuu-----UUUUGG-----UCUG- -5'
351 3' -48.3 AC_000011.1 + 28463 0.69 0.819451
Target:  5'- aGCGCCGugcacaggcuguaaGCGAuGGAGAAGACCAcGAUg -3'
miRNA:   3'- gCGCGGC--------------UGUUcCUUUUUUUGGU-CUG- -5'
351 3' -48.3 AC_000011.1 + 5339 0.73 0.570994
Target:  5'- gGCGCCGAUcGGGAGcgGuuuucgaccAGCCGGAUg -3'
miRNA:   3'- gCGCGGCUGuUCCUUuuU---------UUGGUCUG- -5'
351 3' -48.3 AC_000011.1 + 9879 0.75 0.468409
Target:  5'- cCGCGCgGGCGAGGAGGAGGugCccguGGAg -3'
miRNA:   3'- -GCGCGgCUGUUCCUUUUUUugG----UCUg -5'
351 3' -48.3 AC_000011.1 + 22519 0.75 0.479377
Target:  5'- gCGCGCUGA--AGGAGAAccccGACCGGGCc -3'
miRNA:   3'- -GCGCGGCUguUCCUUUUu---UUGGUCUG- -5'
351 3' -48.3 AC_000011.1 + 17363 0.67 0.893654
Target:  5'- cCGCGgCGAUGAuGGGGAucAGCgCGGGCa -3'
miRNA:   3'- -GCGCgGCUGUU-CCUUUuuUUG-GUCUG- -5'
351 3' -48.3 AC_000011.1 + 7137 0.66 0.939963
Target:  5'- uGCGCCuACAAGGccGucAACCAGu- -3'
miRNA:   3'- gCGCGGcUGUUCCuuUuuUUGGUCug -5'
351 3' -48.3 AC_000011.1 + 25535 0.67 0.893654
Target:  5'- cCGC-CCGugGAGGAuuuggaGGAAGACUGGGa -3'
miRNA:   3'- -GCGcGGCugUUCCU------UUUUUUGGUCUg -5'
351 3' -48.3 AC_000011.1 + 7549 0.67 0.893654
Target:  5'- gGgGuuGGCGcggAGGAAGGAAGuCCAGAg -3'
miRNA:   3'- gCgCggCUGU---UCCUUUUUUU-GGUCUg -5'
351 3' -48.3 AC_000011.1 + 3695 0.68 0.877566
Target:  5'- aGCGCCGuGCGcGGAAu--GGCCauGGGCg -3'
miRNA:   3'- gCGCGGC-UGUuCCUUuuuUUGG--UCUG- -5'
351 3' -48.3 AC_000011.1 + 17186 0.68 0.869071
Target:  5'- aCGgGCUacCGAGGAAGAAAACCGcGCc -3'
miRNA:   3'- -GCgCGGcuGUUCCUUUUUUUGGUcUG- -5'
351 3' -48.3 AC_000011.1 + 15906 0.72 0.654301
Target:  5'- aGCGCCGGCAGgacccGGAGAcgcgcGGCCAcGGCg -3'
miRNA:   3'- gCGCGGCUGUU-----CCUUUuu---UUGGU-CUG- -5'
351 3' -48.3 AC_000011.1 + 7853 0.69 0.791561
Target:  5'- uGCgaGCCGAUggGGAA--GAACUGGAUc -3'
miRNA:   3'- gCG--CGGCUGuuCCUUuuUUUGGUCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.