miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
351 5' -57.9 AC_000011.1 + 9953 0.66 0.448218
Target:  5'- cUCGCCGAGCgCgUCgucgCCGACcugGCgCUCg -3'
miRNA:   3'- -AGCGGUUCGaGgAGa---GGUUG---CGgGAG- -5'
351 5' -57.9 AC_000011.1 + 26286 0.66 0.438254
Target:  5'- aCGCCgAGGCU-CUCUUCAacaaguacuGCGCgCUCa -3'
miRNA:   3'- aGCGG-UUCGAgGAGAGGU---------UGCGgGAG- -5'
351 5' -57.9 AC_000011.1 + 4795 0.66 0.418714
Target:  5'- -gGCCcAGCUCaUCUCCccCGCCC-Cg -3'
miRNA:   3'- agCGGuUCGAGgAGAGGuuGCGGGaG- -5'
351 5' -57.9 AC_000011.1 + 27490 0.66 0.409145
Target:  5'- -aGaCCGAGCUCCagCUCCAGuguaaGCCC-Ca -3'
miRNA:   3'- agC-GGUUCGAGGa-GAGGUUg----CGGGaG- -5'
351 5' -57.9 AC_000011.1 + 9519 0.67 0.390421
Target:  5'- aUCGUCAGcGC-CCUCUCCc-UGCCCa- -3'
miRNA:   3'- -AGCGGUU-CGaGGAGAGGuuGCGGGag -5'
351 5' -57.9 AC_000011.1 + 31610 0.67 0.372266
Target:  5'- aUCGCCucuccuacGAGCUCCUgCagCAGCGCCa-- -3'
miRNA:   3'- -AGCGG--------UUCGAGGA-GagGUUGCGGgag -5'
351 5' -57.9 AC_000011.1 + 5503 0.68 0.346131
Target:  5'- aCGCCcccGAGUccgucuUCCUCgcccCCAagcucuACGCCCUCa -3'
miRNA:   3'- aGCGG---UUCG------AGGAGa---GGU------UGCGGGAG- -5'
351 5' -57.9 AC_000011.1 + 9064 0.68 0.345282
Target:  5'- gUCGCCcAGCgCCUCcaaacguUCCAugGCCUc- -3'
miRNA:   3'- -AGCGGuUCGaGGAG-------AGGUugCGGGag -5'
351 5' -57.9 AC_000011.1 + 10250 0.68 0.337716
Target:  5'- aUGCuCGAGgaCCUCgcgcCCGGCGCCCcCg -3'
miRNA:   3'- aGCG-GUUCgaGGAGa---GGUUGCGGGaG- -5'
351 5' -57.9 AC_000011.1 + 21477 0.68 0.337716
Target:  5'- cCGCCugcgGGCUCUUCugcugcauguUCCugcACGCCUUCg -3'
miRNA:   3'- aGCGGu---UCGAGGAG----------AGGu--UGCGGGAG- -5'
351 5' -57.9 AC_000011.1 + 20304 0.68 0.337716
Target:  5'- cUCGCUggGCUCCgggUUCGAC-CCCUa -3'
miRNA:   3'- -AGCGGuuCGAGGag-AGGUUGcGGGAg -5'
351 5' -57.9 AC_000011.1 + 15441 0.68 0.337716
Target:  5'- gCGCCGcGCgUCCUCUCgAGcCGCaCCUUc -3'
miRNA:   3'- aGCGGUuCG-AGGAGAGgUU-GCG-GGAG- -5'
351 5' -57.9 AC_000011.1 + 15694 0.68 0.329451
Target:  5'- cCGCCGcGC-CCgUCUCCAccguggACGCCgUCa -3'
miRNA:   3'- aGCGGUuCGaGG-AGAGGU------UGCGGgAG- -5'
351 5' -57.9 AC_000011.1 + 23958 0.68 0.321336
Target:  5'- gCGCCAAccGCaCC-CgcgCCGACGCCCUUu -3'
miRNA:   3'- aGCGGUU--CGaGGaGa--GGUUGCGGGAG- -5'
351 5' -57.9 AC_000011.1 + 8891 0.69 0.283017
Target:  5'- aCGCCuucucgcAGCUCaugggccgcaUCUCCAACGaCCUCg -3'
miRNA:   3'- aGCGGu------UCGAGg---------AGAGGUUGCgGGAG- -5'
351 5' -57.9 AC_000011.1 + 15148 0.69 0.275801
Target:  5'- gCGCCGAGCUCCUgcccgucuaCUCCAAgaGCUucUUCa -3'
miRNA:   3'- aGCGGUUCGAGGA---------GAGGUUg-CGG--GAG- -5'
351 5' -57.9 AC_000011.1 + 25131 0.69 0.275801
Target:  5'- cUCGagCAGGC-CCUCgccgCUGACGUCCUCg -3'
miRNA:   3'- -AGCg-GUUCGaGGAGa---GGUUGCGGGAG- -5'
351 5' -57.9 AC_000011.1 + 9045 0.69 0.268733
Target:  5'- aUCGCCAccacGCUcaacuaCCUCUaCCAGCGCCuCUg -3'
miRNA:   3'- -AGCGGUu---CGA------GGAGA-GGUUGCGG-GAg -5'
351 5' -57.9 AC_000011.1 + 15579 0.7 0.235573
Target:  5'- gUGCgCGGGCacuUCCgcgCUCCcuggGGCGCCCUCa -3'
miRNA:   3'- aGCG-GUUCG---AGGa--GAGG----UUGCGGGAG- -5'
351 5' -57.9 AC_000011.1 + 7507 0.71 0.21737
Target:  5'- gUCGCUGAGC-CCgugcugCUCgAGCGCCCa- -3'
miRNA:   3'- -AGCGGUUCGaGGa-----GAGgUUGCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.