miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3511 3' -50.9 NC_001623.1 + 41636 0.66 0.99052
Target:  5'- -------aUCUAaagaauGCCAUGCCCGUGUUu -3'
miRNA:   3'- agcgaaacAGAU------UGGUACGGGCACAG- -5'
3511 3' -50.9 NC_001623.1 + 101440 0.67 0.979935
Target:  5'- aUGCaaUUGUCcGGCCGaugacggguuacUGCCCGUGUUu -3'
miRNA:   3'- aGCGa-AACAGaUUGGU------------ACGGGCACAG- -5'
3511 3' -50.9 NC_001623.1 + 101788 0.67 0.969108
Target:  5'- uUCGCUUgaaac-ACCAUGUCCGcGUCg -3'
miRNA:   3'- -AGCGAAacagauUGGUACGGGCaCAG- -5'
3511 3' -50.9 NC_001623.1 + 47190 0.7 0.90064
Target:  5'- gUCGCUUgaaacgCUGACCGUGUUgGUGUa -3'
miRNA:   3'- -AGCGAAaca---GAUUGGUACGGgCACAg -5'
3511 3' -50.9 NC_001623.1 + 101654 1.12 0.004814
Target:  5'- gUCGCUUUGUCUAACCAUGCCCGUGUCg -3'
miRNA:   3'- -AGCGAAACAGAUUGGUACGGGCACAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.