miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3513 3' -55 NC_001623.1 + 90751 0.66 0.92946
Target:  5'- uGCGgaagacgacUUGUUGCCGacuCGCAGCAGcaaACGUg -3'
miRNA:   3'- gCGCa--------AACAGUGGC---GCGUCGUC---UGCG- -5'
3513 3' -55 NC_001623.1 + 68999 0.66 0.928932
Target:  5'- gGUGUUUGacggCACCGCGUGcgugccagccaccGCGGACa- -3'
miRNA:   3'- gCGCAAACa---GUGGCGCGU-------------CGUCUGcg -5'
3513 3' -55 NC_001623.1 + 87644 0.66 0.924077
Target:  5'- aCGCGgc-GUagGCUGCGCGGacgcuGGCGCg -3'
miRNA:   3'- -GCGCaaaCAg-UGGCGCGUCgu---CUGCG- -5'
3513 3' -55 NC_001623.1 + 12646 0.66 0.922415
Target:  5'- uGCGUaauaaaCGCCGCcauuuuuuuaugacGCAGCAcGGCGCg -3'
miRNA:   3'- gCGCAaaca--GUGGCG--------------CGUCGU-CUGCG- -5'
3513 3' -55 NC_001623.1 + 2307 0.66 0.917875
Target:  5'- cCGCGUUgacUCGCUGCaccucgaGCAGUucguuGACGCc -3'
miRNA:   3'- -GCGCAAac-AGUGGCG-------CGUCGu----CUGCG- -5'
3513 3' -55 NC_001623.1 + 35818 0.66 0.912581
Target:  5'- gGUGU---UCACgGUGCGGCgcuacaacAGACGCg -3'
miRNA:   3'- gCGCAaacAGUGgCGCGUCG--------UCUGCG- -5'
3513 3' -55 NC_001623.1 + 85636 0.69 0.819118
Target:  5'- gCGCGUUuaauauugugccugaUGUCGCgcaUGuCGuCGGCGGGCGCu -3'
miRNA:   3'- -GCGCAA---------------ACAGUG---GC-GC-GUCGUCUGCG- -5'
3513 3' -55 NC_001623.1 + 120785 0.7 0.769843
Target:  5'- aGCGUggGUUA-CGCGCAGCccGCGUg -3'
miRNA:   3'- gCGCAaaCAGUgGCGCGUCGucUGCG- -5'
3513 3' -55 NC_001623.1 + 36609 0.7 0.740797
Target:  5'- uGCGagUGUCAaccUCGCGCAGCAauUGCu -3'
miRNA:   3'- gCGCaaACAGU---GGCGCGUCGUcuGCG- -5'
3513 3' -55 NC_001623.1 + 87685 0.72 0.639104
Target:  5'- cCGCGUUUccCGCCGCGUAcugAGACGCu -3'
miRNA:   3'- -GCGCAAAcaGUGGCGCGUcg-UCUGCG- -5'
3513 3' -55 NC_001623.1 + 23720 0.72 0.628759
Target:  5'- gCGCGcUUGUCuagaaCGCGCAGCuGuuuGCGCg -3'
miRNA:   3'- -GCGCaAACAGug---GCGCGUCGuC---UGCG- -5'
3513 3' -55 NC_001623.1 + 102219 0.75 0.487477
Target:  5'- uCGCGaucgUUGUUcagaaagaaGCCGCGCAaucuuaacgcuGCAGGCGCg -3'
miRNA:   3'- -GCGCa---AACAG---------UGGCGCGU-----------CGUCUGCG- -5'
3513 3' -55 NC_001623.1 + 87823 0.75 0.468394
Target:  5'- aCGCGgacgucGUCGCCGCGCcAGCGucCGCg -3'
miRNA:   3'- -GCGCaaa---CAGUGGCGCG-UCGUcuGCG- -5'
3513 3' -55 NC_001623.1 + 115102 1.12 0.002214
Target:  5'- aCGCGUUUGUCACCGCGCAGCAGACGCc -3'
miRNA:   3'- -GCGCAAACAGUGGCGCGUCGUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.