miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3513 5' -55.5 NC_001623.1 + 37339 0.66 0.877114
Target:  5'- aGGGCGCUuguUGGUGCggCGGCGgaucgGGCAGUu -3'
miRNA:   3'- -CCCGCGGu--AUCACGg-GUUGC-----UCGUUA- -5'
3513 5' -55.5 NC_001623.1 + 88985 0.66 0.86965
Target:  5'- -cGCGUCGagGGUGCUCAGCGAGgAc- -3'
miRNA:   3'- ccCGCGGUa-UCACGGGUUGCUCgUua -5'
3513 5' -55.5 NC_001623.1 + 68574 0.66 0.865064
Target:  5'- uGGGCGCCAcgUGGUgggcgaauGCCCcGCGAauaaaauauuugaucGCAAc -3'
miRNA:   3'- -CCCGCGGU--AUCA--------CGGGuUGCU---------------CGUUa -5'
3513 5' -55.5 NC_001623.1 + 76472 0.67 0.8291
Target:  5'- cGGCGCCAUA---CCC-ACGGGCAc- -3'
miRNA:   3'- cCCGCGGUAUcacGGGuUGCUCGUua -5'
3513 5' -55.5 NC_001623.1 + 64435 0.67 0.817746
Target:  5'- gGGGCGCgAUAGUGUUUugcaucauguuaggGACGGGUAu- -3'
miRNA:   3'- -CCCGCGgUAUCACGGG--------------UUGCUCGUua -5'
3513 5' -55.5 NC_001623.1 + 121753 0.67 0.811507
Target:  5'- cGGCGCauaAUucgaaaucacaaAGaGCCCAACGAGCGc- -3'
miRNA:   3'- cCCGCGg--UA------------UCaCGGGUUGCUCGUua -5'
3513 5' -55.5 NC_001623.1 + 6564 0.68 0.80245
Target:  5'- cGGCGCCugcgccGGUGCCCAcaauCGuGCGc- -3'
miRNA:   3'- cCCGCGGua----UCACGGGUu---GCuCGUua -5'
3513 5' -55.5 NC_001623.1 + 76633 0.68 0.793231
Target:  5'- uGGCGCU--AGUGCCCGugGguauGGCGc- -3'
miRNA:   3'- cCCGCGGuaUCACGGGUugC----UCGUua -5'
3513 5' -55.5 NC_001623.1 + 38170 0.69 0.754922
Target:  5'- -uGCGUggaCGUGGUGCCCGACGGGa--- -3'
miRNA:   3'- ccCGCG---GUAUCACGGGUUGCUCguua -5'
3513 5' -55.5 NC_001623.1 + 55529 0.7 0.652562
Target:  5'- cGGCGCCc--GUGCCC-GCGAuGCAAc -3'
miRNA:   3'- cCCGCGGuauCACGGGuUGCU-CGUUa -5'
3513 5' -55.5 NC_001623.1 + 115068 1.08 0.002877
Target:  5'- cGGGCGCCAUAGUGCCCAACGAGCAAUu -3'
miRNA:   3'- -CCCGCGGUAUCACGGGUUGCUCGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.