miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3516 3' -45.2 NC_001623.1 + 2556 0.66 0.999991
Target:  5'- aCAGaUACUUGUGCgucgcGUgCGGCaCGCc -3'
miRNA:   3'- aGUUaAUGAAUAUGa----UAgGCCGcGCG- -5'
3516 3' -45.2 NC_001623.1 + 65953 0.66 0.999988
Target:  5'- uUCAAUUACaUGgcCgagCUGGCGaCGCg -3'
miRNA:   3'- -AGUUAAUGaAUauGauaGGCCGC-GCG- -5'
3516 3' -45.2 NC_001623.1 + 130235 0.66 0.999988
Target:  5'- uUUAAaUAUUgAUGCgcUCCacGGCGCGCg -3'
miRNA:   3'- -AGUUaAUGAaUAUGauAGG--CCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 10668 0.66 0.999988
Target:  5'- aUAAUUAUa---GCUGUaCGGUGCGCg -3'
miRNA:   3'- aGUUAAUGaauaUGAUAgGCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 53383 0.66 0.999983
Target:  5'- aUAAUaACcguaUAUGCUAUUggCGGUGCGCu -3'
miRNA:   3'- aGUUAaUGa---AUAUGAUAG--GCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 122631 0.66 0.999977
Target:  5'- aUCAGUaucaaUUGUGC--UCCGGCGCa- -3'
miRNA:   3'- -AGUUAaug--AAUAUGauAGGCCGCGcg -5'
3516 3' -45.2 NC_001623.1 + 100896 0.67 0.999955
Target:  5'- uUCGAUUACUauuucggACggcgGUUcaauaagCGGCGCGCg -3'
miRNA:   3'- -AGUUAAUGAaua----UGa---UAG-------GCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 109125 0.67 0.999941
Target:  5'- aCGAUUugUUGcAC-GUgUGGUGCGCa -3'
miRNA:   3'- aGUUAAugAAUaUGaUAgGCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 126708 0.67 0.999941
Target:  5'- gCAGUgUACUUGUugUAugcaaauaaaUCucgauaaagggCGGCGCGCg -3'
miRNA:   3'- aGUUA-AUGAAUAugAU----------AG-----------GCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 120838 0.67 0.999941
Target:  5'- gUCGAUUAgUaUAUGCggaaacCUGGUGCGCc -3'
miRNA:   3'- -AGUUAAUgA-AUAUGaua---GGCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 119925 0.67 0.999941
Target:  5'- aCAauGUUGCUUAgcACgacUCGGCGCGUg -3'
miRNA:   3'- aGU--UAAUGAAUa-UGauaGGCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 34690 0.67 0.999921
Target:  5'- cCAA-UGCUUGUugUGgaUCGGUGUGCc -3'
miRNA:   3'- aGUUaAUGAAUAugAUa-GGCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 81227 0.68 0.999702
Target:  5'- aCGAgucGCUUGUGacg-CCGGUGCGUu -3'
miRNA:   3'- aGUUaa-UGAAUAUgauaGGCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 1901 0.69 0.999621
Target:  5'- aCAG-UGCUcauUACUAaaUCCGGCGUGa -3'
miRNA:   3'- aGUUaAUGAau-AUGAU--AGGCCGCGCg -5'
3516 3' -45.2 NC_001623.1 + 32253 0.69 0.999521
Target:  5'- aUUGAUUACacgAUugUGUUgGGCgGCGCg -3'
miRNA:   3'- -AGUUAAUGaa-UAugAUAGgCCG-CGCG- -5'
3516 3' -45.2 NC_001623.1 + 62716 0.7 0.998854
Target:  5'- uUCGAUUAUUaucgccGCUuguugCCGGCGCGUc -3'
miRNA:   3'- -AGUUAAUGAaua---UGAua---GGCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 62300 0.71 0.997521
Target:  5'- aCAAUUcgGCUuaaUAUACUcgUCGGCGCa- -3'
miRNA:   3'- aGUUAA--UGA---AUAUGAuaGGCCGCGcg -5'
3516 3' -45.2 NC_001623.1 + 110416 0.71 0.996475
Target:  5'- aUCAGUUcuugcaACUUGUuaaUGUCUGGCGCagGCg -3'
miRNA:   3'- -AGUUAA------UGAAUAug-AUAGGCCGCG--CG- -5'
3516 3' -45.2 NC_001623.1 + 41330 0.71 0.995089
Target:  5'- aCGAcggACUUGUGCUGUacauggCCGGUGUGUu -3'
miRNA:   3'- aGUUaa-UGAAUAUGAUA------GGCCGCGCG- -5'
3516 3' -45.2 NC_001623.1 + 84778 0.73 0.984602
Target:  5'- uUCAAUUaGCgucaagcUGCUGaCCGGCGUGCa -3'
miRNA:   3'- -AGUUAA-UGaau----AUGAUaGGCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.