miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3518 3' -49.3 NC_001623.1 + 119950 0.66 0.997295
Target:  5'- aACGgUCGAGCGcCuCGAaaUGUUCGACAc -3'
miRNA:   3'- -UGCgAGUUUGCuGuGCU--ACAGGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 89567 0.66 0.995546
Target:  5'- aACGCUCAguuuggaagaaaAAauaGACACGuUGaCCAGCAu -3'
miRNA:   3'- -UGCGAGU------------UUg--CUGUGCuACaGGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 77079 0.66 0.995546
Target:  5'- cGCGC-CcGACGACGCGcagcuaaacgugAUGUgCAACAu -3'
miRNA:   3'- -UGCGaGuUUGCUGUGC------------UACAgGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 65937 0.67 0.99479
Target:  5'- -aGCU--GGCGACGCGAg--CCGGCAa -3'
miRNA:   3'- ugCGAguUUGCUGUGCUacaGGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 38109 0.67 0.99479
Target:  5'- cCGaCUCAAACGACACcGUGUU--GCAu -3'
miRNA:   3'- uGC-GAGUUUGCUGUGcUACAGguUGU- -5'
3518 3' -49.3 NC_001623.1 + 119608 0.67 0.99479
Target:  5'- aGCGUcaauaGAAUGAgCACGAUG-CCGACAa -3'
miRNA:   3'- -UGCGag---UUUGCU-GUGCUACaGGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 67476 0.67 0.990668
Target:  5'- uGCGUUUggGCGACgACGuGUGUaCAGCAg -3'
miRNA:   3'- -UGCGAGuuUGCUG-UGC-UACAgGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 87513 0.67 0.990668
Target:  5'- -gGUUCAAACgGACACGcUGUUgGACGc -3'
miRNA:   3'- ugCGAGUUUG-CUGUGCuACAGgUUGU- -5'
3518 3' -49.3 NC_001623.1 + 38425 0.68 0.986158
Target:  5'- uGCGCuUCAAAUGACAaaucguUGGUGUugaCCGACGu -3'
miRNA:   3'- -UGCG-AGUUUGCUGU------GCUACA---GGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 105361 0.69 0.980139
Target:  5'- gACGCUUGAGCGGCGC--UGUCaAACGu -3'
miRNA:   3'- -UGCGAGUUUGCUGUGcuACAGgUUGU- -5'
3518 3' -49.3 NC_001623.1 + 30412 0.7 0.962586
Target:  5'- cACGCUCAAGC-ACACGAUGaaC-ACAg -3'
miRNA:   3'- -UGCGAGUUUGcUGUGCUACagGuUGU- -5'
3518 3' -49.3 NC_001623.1 + 99183 0.7 0.958853
Target:  5'- cCGCUCGAACaaucGCACGc-GUCCGGCGa -3'
miRNA:   3'- uGCGAGUUUGc---UGUGCuaCAGGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 65287 0.7 0.950637
Target:  5'- gGCGCUCAacGACGAUAC--UG-CCAGCGa -3'
miRNA:   3'- -UGCGAGU--UUGCUGUGcuACaGGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 49008 0.72 0.907308
Target:  5'- uCGCUCAu-CGACuuGAuauUGUCCGACAc -3'
miRNA:   3'- uGCGAGUuuGCUGugCU---ACAGGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 76416 0.76 0.753828
Target:  5'- cACGCgUCGAACGACACGAUGgacgcgaaaaUgCAGCGa -3'
miRNA:   3'- -UGCG-AGUUUGCUGUGCUAC----------AgGUUGU- -5'
3518 3' -49.3 NC_001623.1 + 30209 1.09 0.011605
Target:  5'- uACGCUCAAACGACACGAUGUCCAACAu -3'
miRNA:   3'- -UGCGAGUUUGCUGUGCUACAGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.