miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
352 3' -61.1 AC_000011.1 + 4498 0.66 0.360832
Target:  5'- gCCCGuGg-GCGgCGGCCUGGGCaaagacguuUCGGGg -3'
miRNA:   3'- -GGGU-CagCGUgGUUGGACCCG---------GGCCC- -5'
352 3' -61.1 AC_000011.1 + 1489 0.66 0.344351
Target:  5'- aUguGUgGCACUuaguGCCUGGGgcguuUCCGGGu -3'
miRNA:   3'- gGguCAgCGUGGu---UGGACCC-----GGGCCC- -5'
352 3' -61.1 AC_000011.1 + 18134 0.66 0.344351
Target:  5'- cCCCGGgucgCGCGCgGGCCacGGCCaccggcggcaGGGg -3'
miRNA:   3'- -GGGUCa---GCGUGgUUGGacCCGGg---------CCC- -5'
352 3' -61.1 AC_000011.1 + 13671 0.66 0.336316
Target:  5'- cCCCGGcUCGUgGCCc-CCUGcgacGCCCGGGg -3'
miRNA:   3'- -GGGUC-AGCG-UGGuuGGACc---CGGGCCC- -5'
352 3' -61.1 AC_000011.1 + 11328 0.67 0.313038
Target:  5'- aCCCuGaUCGCGCgCGAggaggugacCCUGGGCCUGa- -3'
miRNA:   3'- -GGGuC-AGCGUG-GUU---------GGACCCGGGCcc -5'
352 3' -61.1 AC_000011.1 + 12460 0.67 0.305556
Target:  5'- aCCCAGcC-CGCCAACgUGc-CCCGGGg -3'
miRNA:   3'- -GGGUCaGcGUGGUUGgACccGGGCCC- -5'
352 3' -61.1 AC_000011.1 + 11042 0.67 0.29821
Target:  5'- cCCCAGgCGCGCCAGCCccucGCCCu-- -3'
miRNA:   3'- -GGGUCaGCGUGGUUGGacc-CGGGccc -5'
352 3' -61.1 AC_000011.1 + 22675 0.67 0.276998
Target:  5'- uCCCAGaUCGC-CCAcaagaaCUGGGagugcaCCGGGu -3'
miRNA:   3'- -GGGUC-AGCGuGGUug----GACCCg-----GGCCC- -5'
352 3' -61.1 AC_000011.1 + 9950 0.67 0.276998
Target:  5'- gCCGagcgcGUCGuCGCCGACCUGGcGCUCGu- -3'
miRNA:   3'- gGGU-----CAGC-GUGGUUGGACC-CGGGCcc -5'
352 3' -61.1 AC_000011.1 + 16786 0.68 0.263537
Target:  5'- uCCaCGGUCuGCAC--GCCcaGGCCCGGGg -3'
miRNA:   3'- -GG-GUCAG-CGUGguUGGacCCGGGCCC- -5'
352 3' -61.1 AC_000011.1 + 23969 0.68 0.257007
Target:  5'- aCCCGcGcCGaCGCCcuuuucAACCUGGGuCCCGGc -3'
miRNA:   3'- -GGGU-CaGC-GUGG------UUGGACCC-GGGCCc -5'
352 3' -61.1 AC_000011.1 + 5782 0.71 0.165221
Target:  5'- uCCU--UCGUGCUGGCCUGGaCCCGGGc -3'
miRNA:   3'- -GGGucAGCGUGGUUGGACCcGGGCCC- -5'
352 3' -61.1 AC_000011.1 + 30917 0.73 0.116108
Target:  5'- cCCCAGUacCGCgACCAGCgaGGGCgCGGc -3'
miRNA:   3'- -GGGUCA--GCG-UGGUUGgaCCCGgGCCc -5'
352 3' -61.1 AC_000011.1 + 6787 1.12 0.000116
Target:  5'- gCCCAGUCGCACCAACCUGGGCCCGGGg -3'
miRNA:   3'- -GGGUCAGCGUGGUUGGACCCGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.