miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
352 5' -54.2 AC_000011.1 + 25335 0.66 0.682325
Target:  5'- uCCgCCCaagGC-CGAGCUGUcgGcCUGCg -3'
miRNA:   3'- -GG-GGGag-CGuGCUCGACAuaCuGAUG- -5'
352 5' -54.2 AC_000011.1 + 6380 0.66 0.682325
Target:  5'- uCCgCCCUUGCGCGAGCagaagGgg-GGCa-- -3'
miRNA:   3'- -GG-GGGAGCGUGCUCGa----CauaCUGaug -5'
352 5' -54.2 AC_000011.1 + 14950 0.66 0.659639
Target:  5'- uCCUUCUC-CACcGGCUGaAUGACUAUc -3'
miRNA:   3'- -GGGGGAGcGUGcUCGACaUACUGAUG- -5'
352 5' -54.2 AC_000011.1 + 8861 0.66 0.636841
Target:  5'- gCCCgCCUCGUuccagACGcGGCUGUA-GACcACg -3'
miRNA:   3'- -GGG-GGAGCG-----UGC-UCGACAUaCUGaUG- -5'
352 5' -54.2 AC_000011.1 + 13901 0.67 0.568677
Target:  5'- cCUCCCUCGUACGAGagc-GUGAUgcaGCa -3'
miRNA:   3'- -GGGGGAGCGUGCUCgacaUACUGa--UG- -5'
352 5' -54.2 AC_000011.1 + 8162 0.68 0.557455
Target:  5'- uCCagaCCUCgGCGCGAGCggGUcgGAgaGCg -3'
miRNA:   3'- -GGg--GGAG-CGUGCUCGa-CAuaCUgaUG- -5'
352 5' -54.2 AC_000011.1 + 8194 0.69 0.470625
Target:  5'- gCCUCC-CGCGCGGGCUcGUcagcAUGACcACc -3'
miRNA:   3'- -GGGGGaGCGUGCUCGA-CA----UACUGaUG- -5'
352 5' -54.2 AC_000011.1 + 17967 0.7 0.41997
Target:  5'- gCCUCCUCGUACGggggcGGCUcGUccGugUGCg -3'
miRNA:   3'- -GGGGGAGCGUGC-----UCGA-CAuaCugAUG- -5'
352 5' -54.2 AC_000011.1 + 26868 0.72 0.321053
Target:  5'- aCCaCCUCGUcguUGAGCUGUGUGccuCUGCc -3'
miRNA:   3'- gGG-GGAGCGu--GCUCGACAUACu--GAUG- -5'
352 5' -54.2 AC_000011.1 + 5095 0.74 0.234222
Target:  5'- aCCUCCUCGUuucGCGGGUUGggacGGCUGCg -3'
miRNA:   3'- -GGGGGAGCG---UGCUCGACaua-CUGAUG- -5'
352 5' -54.2 AC_000011.1 + 6753 1.12 0.000448
Target:  5'- gCCCCCUCGCACGAGCUGUAUGACUACg -3'
miRNA:   3'- -GGGGGAGCGUGCUCGACAUACUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.