miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3520 5' -46.6 NC_001623.1 + 95194 0.68 0.997828
Target:  5'- uUCAACGACAAUAucuuCAcCAUGGUGGa -3'
miRNA:   3'- uGGUUGUUGUUGUu---GUcGUAUCACCg -5'
3520 5' -46.6 NC_001623.1 + 62878 0.68 0.997828
Target:  5'- cGCCGGCAACAA--GCGGCgAUaauaaucgaaaAGUGGUc -3'
miRNA:   3'- -UGGUUGUUGUUguUGUCG-UA-----------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 23473 0.68 0.997828
Target:  5'- uGCCGAC-ACGGCAuaagcACGGCGUcGcguUGGCg -3'
miRNA:   3'- -UGGUUGuUGUUGU-----UGUCGUAuC---ACCG- -5'
3520 5' -46.6 NC_001623.1 + 19743 0.68 0.997392
Target:  5'- -aCGACGugGACAACAuguGCGacauuagGGUGGCc -3'
miRNA:   3'- ugGUUGUugUUGUUGU---CGUa------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 41166 0.69 0.996885
Target:  5'- --aAACu-CGACGcCAGCAUGGUGGUu -3'
miRNA:   3'- uggUUGuuGUUGUuGUCGUAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 76925 0.69 0.996885
Target:  5'- cACCAACGGCAcCAAC-GCGU--UGGUa -3'
miRNA:   3'- -UGGUUGUUGUuGUUGuCGUAucACCG- -5'
3520 5' -46.6 NC_001623.1 + 34849 0.69 0.996885
Target:  5'- aGCCGAUuGCAGCAaauGCAGCAcguguuaUGGCu -3'
miRNA:   3'- -UGGUUGuUGUUGU---UGUCGUauc----ACCG- -5'
3520 5' -46.6 NC_001623.1 + 32017 0.69 0.995177
Target:  5'- gUCGGCGuUAACGACGGUAUcaaacgaccaaugccGGUGGCu -3'
miRNA:   3'- uGGUUGUuGUUGUUGUCGUA---------------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 58976 0.69 0.994857
Target:  5'- uCCcACAuauCGACAACAGCAauaUGGCg -3'
miRNA:   3'- uGGuUGUu--GUUGUUGUCGUaucACCG- -5'
3520 5' -46.6 NC_001623.1 + 126014 0.69 0.994344
Target:  5'- uUCGACGGuCAGCAACAGaguuaaauauugAGUGGCu -3'
miRNA:   3'- uGGUUGUU-GUUGUUGUCgua---------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 111637 0.7 0.99187
Target:  5'- aACUuaguaGGCGGCGGCGGC--GGUGGCa -3'
miRNA:   3'- -UGGuug--UUGUUGUUGUCGuaUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 6046 0.7 0.99187
Target:  5'- gGCUGGCGGCGGaggcggaGGCGGagGUGGUGGCg -3'
miRNA:   3'- -UGGUUGUUGUUg------UUGUCg-UAUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 75675 0.71 0.98765
Target:  5'- cCUAACGcuACucugGGCGGCGGCGcAGUGGCa -3'
miRNA:   3'- uGGUUGU--UG----UUGUUGUCGUaUCACCG- -5'
3520 5' -46.6 NC_001623.1 + 79600 0.71 0.98765
Target:  5'- cGCUAACGuACAACGAC-GCu--GUGGCc -3'
miRNA:   3'- -UGGUUGU-UGUUGUUGuCGuauCACCG- -5'
3520 5' -46.6 NC_001623.1 + 11248 0.71 0.985919
Target:  5'- aACCGuuggACGACGGCGGCGGCAgGGaaugGGUc -3'
miRNA:   3'- -UGGU----UGUUGUUGUUGUCGUaUCa---CCG- -5'
3520 5' -46.6 NC_001623.1 + 64097 0.71 0.985919
Target:  5'- aACCuau-ACAAUAGCGGCGUgccuuuacaaaaAGUGGCc -3'
miRNA:   3'- -UGGuuguUGUUGUUGUCGUA------------UCACCG- -5'
3520 5' -46.6 NC_001623.1 + 115361 0.71 0.984009
Target:  5'- uGCCAACGACGACGACgaAGCGUAc---- -3'
miRNA:   3'- -UGGUUGUUGUUGUUG--UCGUAUcaccg -5'
3520 5' -46.6 NC_001623.1 + 19090 0.71 0.984009
Target:  5'- cACCAGCGACGugAGCAGCAa------ -3'
miRNA:   3'- -UGGUUGUUGUugUUGUCGUaucaccg -5'
3520 5' -46.6 NC_001623.1 + 105560 0.71 0.980552
Target:  5'- gAUCGACGccuuguuucaguaacGCAuCGACAGCGUAGUGuGUa -3'
miRNA:   3'- -UGGUUGU---------------UGUuGUUGUCGUAUCAC-CG- -5'
3520 5' -46.6 NC_001623.1 + 20428 0.72 0.977094
Target:  5'- gAUCAuuGCAGCGACAAUAGCgAUaauaaccacGGUGGUa -3'
miRNA:   3'- -UGGU--UGUUGUUGUUGUCG-UA---------UCACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.