miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3522 5' -43.2 NC_001623.1 + 62847 0.66 1
Target:  5'- aGUG-GUcgAUGCGA--ACGUGGACGa -3'
miRNA:   3'- aCGCuCAaaUGCGCUuuUGCAUUUGU- -5'
3522 5' -43.2 NC_001623.1 + 32577 0.66 1
Target:  5'- ---aAGUUUGCGUuuGAAAACGUcGACAa -3'
miRNA:   3'- acgcUCAAAUGCG--CUUUUGCAuUUGU- -5'
3522 5' -43.2 NC_001623.1 + 53736 0.66 1
Target:  5'- gUGCuuGUuuguccaauuuaauuUUAUGCGAAGACGgcAACGu -3'
miRNA:   3'- -ACGcuCA---------------AAUGCGCUUUUGCauUUGU- -5'
3522 5' -43.2 NC_001623.1 + 9854 0.66 1
Target:  5'- aGCGAGUUUgAUGCGGu--CGUcGAUg -3'
miRNA:   3'- aCGCUCAAA-UGCGCUuuuGCAuUUGu -5'
3522 5' -43.2 NC_001623.1 + 74114 0.67 0.999998
Target:  5'- uUGCaAGUagACGCG-AAACGUGcAACAu -3'
miRNA:   3'- -ACGcUCAaaUGCGCuUUUGCAU-UUGU- -5'
3522 5' -43.2 NC_001623.1 + 16133 0.68 0.999993
Target:  5'- uUGCGgaacAGcUUGgGCGAAAACGUcgGCGu -3'
miRNA:   3'- -ACGC----UCaAAUgCGCUUUUGCAuuUGU- -5'
3522 5' -43.2 NC_001623.1 + 76126 0.68 0.999993
Target:  5'- cGCGGGUgu-CGCGAGAcgaauuGCGUuucuuuGACGu -3'
miRNA:   3'- aCGCUCAaauGCGCUUU------UGCAu-----UUGU- -5'
3522 5' -43.2 NC_001623.1 + 67474 0.68 0.999986
Target:  5'- aGUGcGUUUGgGCGAcGACGUGuguACAg -3'
miRNA:   3'- aCGCuCAAAUgCGCUuUUGCAUu--UGU- -5'
3522 5' -43.2 NC_001623.1 + 19708 0.69 0.99998
Target:  5'- gUGCGAgauugaaauGUUUAUgggucgauauaGCGAcGACGUGGACAa -3'
miRNA:   3'- -ACGCU---------CAAAUG-----------CGCUuUUGCAUUUGU- -5'
3522 5' -43.2 NC_001623.1 + 2454 0.69 0.999972
Target:  5'- aGCGAGUcaACGCGGGcggggaguUGUAGGCGu -3'
miRNA:   3'- aCGCUCAaaUGCGCUUuu------GCAUUUGU- -5'
3522 5' -43.2 NC_001623.1 + 6041 0.7 0.999837
Target:  5'- gGCGGGgcugGCgGCGGAGGCGgaGGCGg -3'
miRNA:   3'- aCGCUCaaa-UG-CGCUUUUGCauUUGU- -5'
3522 5' -43.2 NC_001623.1 + 101146 0.71 0.999554
Target:  5'- gUGCGuGUgcgACGaCGGGuACGUGAGCGa -3'
miRNA:   3'- -ACGCuCAaa-UGC-GCUUuUGCAUUUGU- -5'
3522 5' -43.2 NC_001623.1 + 37643 0.74 0.994339
Target:  5'- gGUGGGUUUgACGagagccauCGAAAACGUGGGCAg -3'
miRNA:   3'- aCGCUCAAA-UGC--------GCUUUUGCAUUUGU- -5'
3522 5' -43.2 NC_001623.1 + 46143 1.11 0.037232
Target:  5'- cUGCGAGUUUACGCGAAAACGUAAACAa -3'
miRNA:   3'- -ACGCUCAAAUGCGCUUUUGCAUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.