miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3523 5' -54.1 NC_001623.1 + 102100 0.66 0.939462
Target:  5'- ---aGAGCGGUCacuacaGGCGAcaUGACC-Ca -3'
miRNA:   3'- uuuaCUCGCCGG------CCGCUuaACUGGcG- -5'
3523 5' -54.1 NC_001623.1 + 129212 0.66 0.934475
Target:  5'- --uUGAGgcgaaucugGGUCGGCGGAcgGAUCGCu -3'
miRNA:   3'- uuuACUCg--------CCGGCCGCUUaaCUGGCG- -5'
3523 5' -54.1 NC_001623.1 + 14460 0.66 0.929236
Target:  5'- uAAUGAGUuaaauaGGCgGGC-AGUUGuCCGCu -3'
miRNA:   3'- uUUACUCG------CCGgCCGcUUAACuGGCG- -5'
3523 5' -54.1 NC_001623.1 + 110397 0.66 0.923743
Target:  5'- uAAUGucUGGCgcaGGCGggUUGgcgGCCGCa -3'
miRNA:   3'- uUUACucGCCGg--CCGCuuAAC---UGGCG- -5'
3523 5' -54.1 NC_001623.1 + 52083 0.66 0.917998
Target:  5'- ---aGAGCGcacuGCCGGCGcg-UGaAUCGCa -3'
miRNA:   3'- uuuaCUCGC----CGGCCGCuuaAC-UGGCG- -5'
3523 5' -54.1 NC_001623.1 + 108471 0.67 0.899254
Target:  5'- --cUGGuGUGuGCCGGCGGAUUGgugcACgGCa -3'
miRNA:   3'- uuuACU-CGC-CGGCCGCUUAAC----UGgCG- -5'
3523 5' -54.1 NC_001623.1 + 2370 0.67 0.892512
Target:  5'- ---cGAGCGGgUGGuCGA--UGACCaGCg -3'
miRNA:   3'- uuuaCUCGCCgGCC-GCUuaACUGG-CG- -5'
3523 5' -54.1 NC_001623.1 + 68570 0.68 0.854467
Target:  5'- uAAAUGGGCgccacguGGUgGGCGAAUgccCCGCg -3'
miRNA:   3'- -UUUACUCG-------CCGgCCGCUUAacuGGCG- -5'
3523 5' -54.1 NC_001623.1 + 66673 0.68 0.838832
Target:  5'- uAAGUuuGCGcGCUGGUGAAUaUGGCCGUu -3'
miRNA:   3'- -UUUAcuCGC-CGGCCGCUUA-ACUGGCG- -5'
3523 5' -54.1 NC_001623.1 + 122328 0.69 0.794405
Target:  5'- ---cGA-CGG-CGGCGAGUUGGCgGCa -3'
miRNA:   3'- uuuaCUcGCCgGCCGCUUAACUGgCG- -5'
3523 5' -54.1 NC_001623.1 + 68185 0.69 0.794405
Target:  5'- --uUGAGCGGCgacaaGGcCGAcgUGACCa- -3'
miRNA:   3'- uuuACUCGCCGg----CC-GCUuaACUGGcg -5'
3523 5' -54.1 NC_001623.1 + 108350 0.77 0.392832
Target:  5'- --cUGAGCgacaucacuuccauGGCUgaaGGCGAAUUGGCCGCu -3'
miRNA:   3'- uuuACUCG--------------CCGG---CCGCUUAACUGGCG- -5'
3523 5' -54.1 NC_001623.1 + 65707 1.1 0.002822
Target:  5'- cAAAUGAGCGGCCGGCGAAUUGACCGCg -3'
miRNA:   3'- -UUUACUCGCCGGCCGCUUAACUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.