Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3526 | 3' | -54.4 | NC_001623.1 | + | 80216 | 1.05 | 0.004754 |
Target: 5'- aAUCACCAAACGCGGCCAGCACAUCUAg -3' miRNA: 3'- -UAGUGGUUUGCGCCGGUCGUGUAGAU- -5' |
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3526 | 3' | -54.4 | NC_001623.1 | + | 123057 | 0.72 | 0.579932 |
Target: 5'- gAUCAUugCAAACGCGGCCgAGCGCAc--- -3' miRNA: 3'- -UAGUG--GUUUGCGCCGG-UCGUGUagau -5' |
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3526 | 3' | -54.4 | NC_001623.1 | + | 120424 | 0.71 | 0.622544 |
Target: 5'- gAUCggGCCGAACGUuaaaaGCCGGCACAUCg- -3' miRNA: 3'- -UAG--UGGUUUGCGc----CGGUCGUGUAGau -5' |
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3526 | 3' | -54.4 | NC_001623.1 | + | 62725 | 0.7 | 0.717958 |
Target: 5'- uAUCGCCGcuUGuuGCCGGCGCGUCg- -3' miRNA: 3'- -UAGUGGUuuGCgcCGGUCGUGUAGau -5' |
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3526 | 3' | -54.4 | NC_001623.1 | + | 46178 | 0.66 | 0.881875 |
Target: 5'- gGUgAUCucACGCGGCgGGCACAUg-- -3' miRNA: 3'- -UAgUGGuuUGCGCCGgUCGUGUAgau -5' |
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3526 | 3' | -54.4 | NC_001623.1 | + | 130412 | 0.66 | 0.90277 |
Target: 5'- uAUCAuCCGuaucAACGCGcGCCguggAGCGCAUCa- -3' miRNA: 3'- -UAGU-GGU----UUGCGC-CGG----UCGUGUAGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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